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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021527m | ||||||||
Common Name | EUTSA_v10021527mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 23595.6 Da PI: 4.9412 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 30 | 121 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv +ps + ++ ++++p +f++ g+k s +tle++ g + ++kl ++ ++++++++GW+eF++a+ + eg f++Fk++g+s+f +v Thhalv10021527m 30 FFKVVLPSTMKSN-MMRIPTRFVKLQGSK--LSEVVTLESPVGFKRSIKL--KRIGEEIWFQEGWSEFAEAHSISEGHFLIFKYKGNSSF--LV 116 7888877776666.6********555554..7789***************..**************************************..** PP EEE-S CS B3 95 kvfrk 99 ++f+ Thhalv10021527m 117 TIFDV 121 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-24 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-23 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.999 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-20 | 30 | 122 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.25E-18 | 30 | 120 | No hit | No description |
Pfam | PF02362 | 2.9E-16 | 30 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVTTRGTQAR VTAVSHRRPP TKPESPVKNF FKVVLPSTMK SNMMRIPTRF VKLQGSKLSE 60 VVTLESPVGF KRSIKLKRIG EEIWFQEGWS EFAEAHSISE GHFLIFKYKG NSSFLVTIFD 120 VSACEIDYPL DEVHISDSDD EVVDITDAEF LPTQGTGGDD QSVKGGASED KRKNRPRDNE 180 FEKILNDVDG INPIVLEEEE EEKRVFRE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021527m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406546.1 | 1e-151 | B3 domain-containing protein At3g18960 | ||||
Swissprot | Q84R27 | 2e-98 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | V4LW15 | 1e-150 | V4LW15_EUTSA; Uncharacterized protein | ||||
STRING | XP_006406546.1 | 1e-151 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 6e-97 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021527m |
Entrez Gene | 18023092 |
Publications ? help Back to Top | |||
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