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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10021393m |
| Common Name | EUTSA_v10021393mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
ERF |
| Protein Properties |
Length: 250aa MW: 27031.1 Da PI: 8.9884 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10021393m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 63.4 | 4.7e-20 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr ++ +gr++AeIrdp + + r++lg+f++ae+Aa+a++aa+++l+g
Thhalv10021393m 28 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEDAARAYDAAARNLRG 78
68********.**********743...5*************************99 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MRKGRGSSIA GPALPVPAGN HNGSVKEPRY RGVRKRPWGR FAAEIRDPLK KSRVWLGTFD 60
SAEDAARAYD AAARNLRGPK AKTNFPIDCS PSSPLQPLNY QNHQNQNMCS ASPFAANQSQ 120
IDPFMDHRLY GGGNFQDQQI IISRPASSSM SSTVKSFSGP RPTTIEAASS SVAKPLPATK 180
RYPRTPPVAP EDCHSDCDSS SSVVDDGDDI ASSSSRRKPP FQFDLNFPPL DGVDLFAGTD 240
DLHCTDLRL*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gcc_A | 7e-21 | 30 | 87 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| 5wx9_A | 1e-20 | 29 | 95 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Galuschka C,Schindler M,Bülow L,Hehl R
AthaMap web tools for the analysis and identification of co-regulated genes.
Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
[PMID:17148485] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Giuntoli B,Perata P
Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
Plant Physiol., 2018. 176(2): p. 1143-1155
[PMID:29269576]
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