PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021356m
Common NameEUTSA_v10021356mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 260aa    MW: 29981.1 Da    PI: 9.4895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021356mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.6e-12251031299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++++ ++p +f++++++       l++   +g+sW++ l  ++ +++ ++ ++ W eFv++n L   D+++F++++++ f   v++f+k
  Thhalv10021356m  25 SKSMRMIPEEFVRSIKHR------LVFSVHWGNSWQLWL--QGDKKGlFMVKEDWDEFVDDNLLGPDDTLLFTHQDTMHF--QVRIFKK 103
                      456689******999765......9**************..777777799***********************9887998..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-127105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-138104IPR015300DNA-binding pseudobarrel domain
CDDcd100174.73E-1211102No hitNo description
SMARTSM010194.1E-1313104IPR003340B3 DNA binding domain
PROSITE profilePS5086310.46114104IPR003340B3 DNA binding domain
PfamPF023625.9E-925103IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-11158243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-8159245IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0067165258IPR003340B3 DNA binding domain
PROSITE profilePS508636.188222258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MLPKSENQSK PSFSKSLSLG QNWKSKSMRM IPEEFVRSIK HRLVFSVHWG NSWQLWLQGD  60
KKGLFMVKED WDEFVDDNLL GPDDTLLFTH QDTMHFQVRI FKKDGKEINS VPLEVETGTE  120
PFHPKPRNSL QEATPGKRRP GRAGKNCSDV ENLKRYLVNP QNPFFKKTLT KTNHILYVSS  180
WVIEKYGLEF APHNSEMYFH LPHGTKHKGF TKFYGRSHGF NGWEEVSERY NLKVGDSVVC  240
ELELSGGVVA AVRVHFLNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021356m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406671.10.0B3 domain-containing protein At5g25470
RefseqXP_024015560.10.0B3 domain-containing protein At5g25470
SwissprotQ680D94e-92Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLV4LWD50.0V4LWD5_EUTSA; Uncharacterized protein
STRINGXP_006406671.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.32e-94B3 family protein