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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Thhalv10021328m |
| Common Name | EUTSA_v10021328mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
LBD |
| Protein Properties |
Length: 269aa MW: 28757.8 Da PI: 8.1497 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10021328m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94.7 | 1e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q
Thhalv10021328m 4 SCNGCRVLRKGCSEDCSIRPCLawiktPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQ 97
6********************************************************************************************* PP
DUF260 90 lkaelallke 99
+++e+++ +e
Thhalv10021328m 98 AAVEAVMKGE 107
***9988776 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKT PEAQANATVF LAKFYGRAGL MNLINAGPDH 60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EIATDAATNG 120
QGPPLKMYDI RHNSKDENSA AAAAATGSTD LKRAKTRRTK RVAALAKRAE SEGKSGGEEA 180
SHESSLSHQS EIVAAYEGES KESESNVSEV MTLSPPAVQG SAGEIKLDLT LGLEPVSRAY 240
HVVPVKKRKI GVFGTCQEES PCKTELML*
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