PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021322m
Common NameEUTSA_v10021322mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 271aa    MW: 30497.4 Da    PI: 6.7296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021322mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-12134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Thhalv10021322m 134 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 178
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.033891IPR017884SANT domain
SMARTSM007173.2E-73991IPR001005SANT/Myb domain
SuperFamilySSF466891.93E-114196IPR009057Homeodomain-like
CDDcd001672.83E-74388No hitNo description
PROSITE profilePS5129418.577127183IPR017930Myb domain
SuperFamilySSF466892.28E-15129182IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17130182IPR006447Myb domain, plants
SMARTSM007171.7E-10131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-11131183IPR009057Homeodomain-like
CDDcd001674.57E-9134178No hitNo description
PfamPF002494.4E-10134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLEISHPNQL METLHPLSHV PISEHRFVVQ EMMSLQSTSS SIWTKEENKM FERALAIYAE  60
DSPDRWFKVA SMIPGKTVFD VMKQYSKLEE DVFDIEAGRV PIPGYPTDGF DPNTCRKRPN  120
GARGSDQDRK KGVPWTEEEH RRFLLGLLKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYQ  180
RQLSGAKDKR RPSIHDTTTV NLLNANLINR SFSDHIDILP DLGFIDKDNA EEGIMFMGQN  240
LSSENLFSPS PSSFDAAINF AGANAFGVGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1833118186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021322m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0844870.0AY084487.1 Arabidopsis thaliana clone 109398 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407460.10.0transcription factor DIVARICATA
SwissprotQ8S9H75e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4M9400.0V4M940_EUTSA; Uncharacterized protein
STRINGXP_006407460.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-151MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]