PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021306m
Common NameEUTSA_v10021306mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 277aa    MW: 31543.1 Da    PI: 6.4564
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021306mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.56e-40351341100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am++++++++ara+dPv+G++++i+kl++q+e++++el
  Thhalv10021306m  35 ACAACKYQRRKCAPDCLLAPYFPHDRHHQFLNAHKLFGVSNITKIIKSLSPPEKDAAMHTIMFQSDARANDPVEGCYSIIRKLHHQIECTRNEL 128
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      + + ++
  Thhalv10021306m 129 EIVLQQ 134
                      998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.77434135IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3735131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPSGKPSSVF PLHPKPTPLK SSSSTSNSNN STNQACAACK YQRRKCAPDC LLAPYFPHDR  60
HHQFLNAHKL FGVSNITKII KSLSPPEKDA AMHTIMFQSD ARANDPVEGC YSIIRKLHHQ  120
IECTRNELEI VLQQLAVLRD RAHNHHHLHH PQESHIQMQE PEDLSSFSSS CDLNNNNNNL  180
IPYNYPLHHV QEQNQQQQQQ QYCSPGTFNG LQEDMWCLQL QDSSTTVNLK SGFIDECEDV  240
KPVEEVSSER HEFENHEDFV EQRKLDLPSA QFIISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-25251291105LOB family transfactor Ramosa2.1
5ly0_B5e-25251291105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021306m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407159.10.0LOB domain-containing protein 22
SwissprotQ9LRW11e-161LBD22_ARATH; LOB domain-containing protein 22
TrEMBLV4M1D00.0V4M1D0_EUTSA; Uncharacterized protein
STRINGXP_006407159.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-138LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]