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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021250m | ||||||||
Common Name | EUTSA_v10021250mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NF-YA | ||||||||
Protein Properties | Length: 292aa MW: 32342.1 Da PI: 10.5154 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.8 | 3.1e-32 | 153 | 209 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF Thhalv10021250m 153 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGSGGRF 209 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.9E-36 | 151 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.507 | 152 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-26 | 154 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-22 | 155 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 157 | 177 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.4E-22 | 186 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MTDKSNNTLS MKMEMMSTHF PGMQQTGFQL QEHDSSSTQS TRGDSSGEVA SLGEHNNNKR 60 YGHSSVTHLS DAGYKENAGN PSGSHSKSIL SKVSQNSAVP STIEASWPLH GTETPHYNGF 120 MSFPYASQHT VQHPQIGGLV PCRMLLPHNT QENEPIFVNA KQYQAILRRR QHRAKLEAQN 180 KLIKVRKPYL HESRHLHALK RARGSGGRFL NTKKLQESKS PQSPSFLGTP RFFKNPQGKF 240 RQREIPGVGV GSSGSATSCS DLTGNNNDMF QQNPQFRFSG YPSNHHVSVL M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 153 | 231 | 2 | 78 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021250m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015183.1 | 0.0 | nuclear transcription factor Y subunit A-6 isoform X1 | ||||
Swissprot | Q9LVJ7 | 1e-133 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | V4NPX0 | 0.0 | V4NPX0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407138.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14733 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 1e-126 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021250m |
Entrez Gene | 18024129 |
Publications ? help Back to Top | |||
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