PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021235m
Common NameEUTSA_v10021235mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 299aa    MW: 33436.8 Da    PI: 6.4064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021235mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.7e-081772151255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      RR+r+ +++  L +l+P+       K+s a iL +A +Y+k Lq
  Thhalv10021235m 177 RRRRVSDKIRSLEKLMPWE-----SKMSLAKILDEAHKYVKFLQ 215
                      9*****************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.588165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-8177222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-5177215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-4177219No hitNo description
Gene3DG3DSA:4.10.280.102.1E-7177221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEYESLSELP PLPQELESME YSYSTHFPYA INPLESLPPF PSSDFAPYYG GFTFSDQHGL  60
LHLQEHVAAD SLFLDSSLSL LTESTRLEKF FSDDEPFLHL PHLKSFEKTT TTAVADDTKP  120
PFLSLAPPLP DEKLRRRRSV VKRTFTISPS PQSSYSKSRS PATSSSSFSQ STYGGDRRRR  180
VSDKIRSLEK LMPWESKMSL AKILDEAHKY VKFLQSQIAS LRWMPLESVY CTAAGEVGEE  240
VGGGGVTDPL KSLTRQQILQ VLANSPGART QLYTRGVCVF SYEQLLSVEM MAQSARNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021235m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406212.10.0transcription factor bHLH117
SwissprotQ9LRJ41e-66BH117_ARATH; Transcription factor bHLH117
TrEMBLV4LB630.0V4LB63_EUTSA; Uncharacterized protein
STRINGXP_006406212.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]