PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WRKY

Protein Properties

Length: 331aa MW: 36798.8 Da PI: 9.7733

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10021115m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.2e-30	263	320	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeH h+ Thhalv10021115m 263 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHSHS 320 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.6E-15	223	259	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.9E-32	249	320	IPR003657	WRKY domain
PROSITE profile	PS50811	28.782	256	322	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-26	259	320	IPR003657	WRKY domain
SMART	SM00774	3.6E-36	261	321	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	263	319	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEEVEAASKS AIESCHGVLN LLSQQGNDSN SLMVETREAV SKFKKVASLL TRGSGHGKFR 60 RINNKFRSSF PQHIFLESPI CCVNDVSSDY TQVLAPEPLQ MVPASVVYDE IDPKHQLGHP 120 PLMLSHKMRV ERSFLELKPP PFRAPYQLIH NHQQIAYSRS NSGVNLKFDG SGSSCYTPSV 180 SNGSRSFVSS LSMDASVADY DRSSFHITGL SDQISQHSRK MCSGSLKCGS RSKCHCSKKR 240 KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE 300 RCIDETSMLI VTYEGEHSHS RILSSQSAHT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-20	254	319	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10021115m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353314	0.0	AK353314.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408166.1	0.0	probable WRKY transcription factor 39
Swissprot	Q9SR07	0.0	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	E4MXR7	0.0	E4MXR7_EUTHA; mRNA, clone: RTFL01-24-G13
TrEMBL	V4M0K8	0.0	V4M0K8_EUTSA; Uncharacterized protein
STRING	XP_006408166.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	0.0	WRKY DNA-binding protein 39

Link Out ? help Back to Top
Phytozome	Thhalv10021115m
Entrez Gene	18025248

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]