PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 379aa MW: 42306.5 Da PI: 5.3157

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10020941m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.6	1.2e-32	179	233	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ Thhalv10020941m 179 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 233 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.02E-17	177	233	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-29	178	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-23	179	233	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-10	181	232	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-20	267	313	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MNNPVPCQVF PLVSGGSSSG FCNGMYVSAH ERTSSQVSGE GQRQEFSVEG TQSLPVISQP 60 REQKDMSWSS DHLQGFFDFP VPDPQAESSR AMVSSEELHS KSEWPDWANQ LISVDDGVEP 120 NWSELLGDPN VLDQDSKIPI LSSDTAKQEI VVYNQHHVDP SSMEKFNAKS SPASSVTSKQ 180 RMRWTPELHE AFVEAINQLG GSERATPKAV LKLINSPGLT IYHVKSHLQK YRTARYKPEL 240 IQDTEKPPEK NLTTIEDIKS LDLKTSIEIT EALRLQMEVQ KQLHAQLEIQ RSLQLQIEEQ 300 GRCLQIMIEK QQKLQEKKKG SSCSSPMPEA DLSAPSPDLL QVFPNSELSI NQKLQSSFCT 360 MDQSEAASGT TRKRVRKD*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MNNPVPCQVF PLVSGGSSSG FCNGMYVSAH ERTSSQVSGE GQRQEFSVEG TQSLPVISQP  60
REQKDMSWSS DHLQGFFDFP VPDPQAESSR AMVSSEELHS KSEWPDWANQ LISVDDGVEP  120
NWSELLGDPN VLDQDSKIPI LSSDTAKQEI VVYNQHHVDP SSMEKFNAKS SPASSVTSKQ  180
RMRWTPELHE AFVEAINQLG GSERATPKAV LKLINSPGLT IYHVKSHLQK YRTARYKPEL  240
IQDTEKPPEK NLTTIEDIKS LDLKTSIEIT EALRLQMEVQ KQLHAQLEIQ RSLQLQIEEQ  300
GRCLQIMIEK QQKLQEKKKG SSCSSPMPEA DLSAPSPDLL QVFPNSELSI NQKLQSSFCT  360
MDQSEAASGT TRKRVRKD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-29	179	237	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10020941m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014879.1	0.0	myb family transcription factor PHL13 isoform X2
Swissprot	F4J3P7	0.0	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	V4NSJ6	0.0	V4NSJ6_EUTSA; Uncharacterized protein
STRING	XP_006408187.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10020941m
Entrez Gene	18024333

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]