 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10020894m |
| Common Name | EUTSA_v10020894mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
C3H |
| Protein Properties |
Length: 392aa MW: 43649.8 Da PI: 7.2781 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10020894m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 27.8 | 4.4e-09 | 110 | 134 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ C f + GtC+ G+ C+FaHg
Thhalv10020894m 110 YKTRMCAKFKA-GTCRNGELCNFAHG 134
9**********.*************8 PP
|
| 2 | zf-CCCH | 18.5 | 3.6e-06 | 198 | 212 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yG+rC+F+H
Thhalv10020894m 198 F-GeECPYGERCNFIH 212
5.449*********** PP
|
| 3 | zf-CCCH | 37.4 | 4.2e-12 | 276 | 301 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f G+C++Gd+C+FaHg+
Thhalv10020894m 276 WKTRLCMKFEI-GQCPFGDNCSFAHGQ 301
8**********.*************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 6.0E-15 | 107 | 142 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.98E-8 | 108 | 140 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.849 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.0E-4 | 109 | 135 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-5 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.011 | 187 | 214 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.211 | 187 | 215 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-6 | 187 | 213 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-7 | 189 | 213 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.1E-8 | 274 | 305 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.971 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-13 | 275 | 304 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.2E-7 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.4E-10 | 276 | 301 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMV NPMNNEQVDL HSQSESQSQS QSQSQPPQQL 60
QPSLKRPRLV DDNLFNPASS FPPTSNNNNP SMVPSLNPPP VNKGTANIFY KTRMCAKFKA 120
GTCRNGELCN FAHGIEDLRQ PPSNWQEIVG PPVQDRERER ERERERERER PSSVSVGNNW 180
EDDQKIILRM KLCRKFCFGE ECPYGERCNF IHEDLSKFRE ESGKPRESSV ISVGTSVADS 240
PCVENGTTAY NQIDVNRQGG IPVPAPINSN GGVKFWKTRL CMKFEIGQCP FGDNCSFAHG 300
QAELHNSLGR VDGEAVNAVA SVIKQTVAPA NEAFAMKPTA QVTADSSGLN DEGRRKKCLL 360
KWSDSKKINR IYGDWIDDLP VGQKSTKPVQ S*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 159 | 169 | RERERERERER |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353521 | 0.0 | AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16. |
