PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020800m
Common NameEUTSA_v10020800mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 424aa    MW: 49041.8 Da    PI: 7.979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020800mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08731126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+lC  ++++GtC++ ++C+FaHg
  Thhalv10020800m  7 YKTKLCVLYRKSGTCSR-PNCTFAHG 31
                     9****************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-12438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-6436IPR000571Zinc finger, CCCH-type
SMARTSM003560.005632IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.408633IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSGSSMYKTK LCVLYRKSGT CSRPNCTFAH GTAELRRPGE SSFTGRRHNL DIDLRNKLGR  60
QFSPERRHSL DRSGRRFQRF SGHENHRPFE RRRDEDYRGN RRYDERSDNA GGLKDGNRIE  120
VREKDERNKF QGYNNDLEEQ LKDVELDVKI LTDDKLRLQA SFERKAQEAD ILTSRIQELK  180
TQLDREKEEC KRITSSTKKF VKEYNRFLRA QDDLKRSQAR LQKLGNQLST YLLGNEGNDR  240
DADVDIVSDA ENNGRNLRTA SDSQNELQNT SSLFRKRHYE DQFTTNEPVE DALIRRGEEE  300
KVENVKRPSR WNMVSSKAFS EEESGVRNDE DAINSSKEDN WKRRKFSSGT SSSNKVVSST  360
SMAGRAFDEV AEYEENRQAS TKGSPLKSLP PPPPFRDAHF QGDEEDVNDD VMEQRKANDV  420
ESI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020800m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406234.10.0zinc finger CCCH domain-containing protein 40
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLV4LYT80.0V4LYT8_EUTSA; Uncharacterized protein
STRINGXP_006406234.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein