PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020795m
Common NameEUTSA_v10020795mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 426aa    MW: 48428.6 Da    PI: 7.2794
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020795mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.53.6e-23109212186
         trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                      +Wt+ +v++Li a+ +++++ + +                  +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++
  Thhalv10020795m 109 KWTDTMVRLLIMAVFYIGDEAGLSDqidakkkiagggggmlqQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVV 202
                      7**************998888855335556677778888888**********************************************5599** PP

         trihelix  77 stcpyfdqle 86 
                      ++  ++d ++
  Thhalv10020795m 203 ENQGLLDAMD 212
                      **99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-20107238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MESTNVMFSG FSPRMLSLEM PQNPQNPQNP VQFQHPHPYA ATGNPTTGDQ QTQPLIKPLY  60
PYASKPKQLS PASVGDDEDR GSGSGSGCHP EDSAGTDGKR KISQWHRMKW TDTMVRLLIM  120
AVFYIGDEAG LSDQIDAKKK IAGGGGGMLQ QKKGKWKSVS RAMVEKGFSV SPQQCEDKFN  180
DLNKRYKRVN DILGKGTACR VVENQGLLDA MDHLTPKLKD EVKKLLNSKH LFFREMCAYH  240
NSCGHLGGHD QPQPNQAPIQ GRPEQQSCFH AAESGKMARI AESEEEEESD MAEDSESEME  300
DTEEEEEETR KKRRKGEGVS PAVKRMREEA TRVLEDAGKS ALEKKEWMRT KTLELEERKV  360
GYEWEAVEME KQRVKWLRYR SKKEREMEKA NLENQRRRLE TERMVLILRR REIELAELQS  420
SCKPG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310314KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020795m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407612.10.0uncharacterized protein LOC18023903
TrEMBLV4LF260.0V4LF26_EUTSA; Uncharacterized protein
STRINGXP_006407612.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors