PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 443aa MW: 48929.2 Da PI: 5.2741

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10020738m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.7	3.6e-30	232	286	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe F + v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl Thhalv10020738m 232 KPRMRWTPELHELFAKSVTELEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 286 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.13E-15	230	286	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-29	230	287	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-22	232	287	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	234	285	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-22	322	369	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MNSHRLVSTA QDECNKGIRQ ACSSSSLSPV HNFLNVVQSE NRKSPFIRSK SPDSPDQLWP 60 KNSSQSTFSR SSTFCTNLYV SSSSSSEAQK HLGNSLPFLP DPSAYSQSAS GVESARSPSF 120 FSEDLGNPFD GDSSGSLVKD FLNLSGNACS DGGFHDLDCS NDSYCLSDQM ELQFLSDELE 180 LAITDRAETP RLDEIYETPL SSNPVTRTSL SQSCVAGATS TDAVPGSAAS HKPRMRWTPE 240 LHELFAKSVT ELEGPEKATP KAVLKLMNVE GLTIYHVKSH LQKYRLAKYM PEKKEEKKNV 300 NSEEKKTALS NSEADEKKKG AIQLTEALRM QMEVQKQLHE QLEVQRVLQL RIEEHAKYLE 360 KMLEEQRKTT GRLISSSSSQ TLLSPSDDSI PECQNMSKTE ASSPQPSSPA KNTVSETEDG 420 DCESPQKRRR LENDAESEDP KR*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MNSHRLVSTA QDECNKGIRQ ACSSSSLSPV HNFLNVVQSE NRKSPFIRSK SPDSPDQLWP  60
KNSSQSTFSR SSTFCTNLYV SSSSSSEAQK HLGNSLPFLP DPSAYSQSAS GVESARSPSF  120
FSEDLGNPFD GDSSGSLVKD FLNLSGNACS DGGFHDLDCS NDSYCLSDQM ELQFLSDELE  180
LAITDRAETP RLDEIYETPL SSNPVTRTSL SQSCVAGATS TDAVPGSAAS HKPRMRWTPE  240
LHELFAKSVT ELEGPEKATP KAVLKLMNVE GLTIYHVKSH LQKYRLAKYM PEKKEEKKNV  300
NSEEKKTALS NSEADEKKKG AIQLTEALRM QMEVQKQLHE QLEVQRVLQL RIEEHAKYLE  360
KMLEEQRKTT GRLISSSSSQ TLLSPSDDSI PECQNMSKTE ASSPQPSSPA KNTVSETEDG  420
DCESPQKRRR LENDAESEDP KR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	426	430	KRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10020738m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353483	0.0	AK353483.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-K13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407271.1	0.0	myb family transcription factor PHL6
Refseq	XP_006407272.1	0.0	myb family transcription factor PHL6
Refseq	XP_024015319.1	0.0	myb family transcription factor PHL6
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	E4MY86	0.0	E4MY86_EUTHA; mRNA, clone: RTFL01-45-K13
TrEMBL	V4LE32	0.0	V4LE32_EUTSA; Uncharacterized protein
STRING	XP_006407271.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10020738m
Entrez Gene	18025188

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]