PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020579m
Common NameEUTSA_v10020579mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 500aa    MW: 55394.6 Da    PI: 7.6844
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020579mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-1775121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Thhalv10020579m  75 KGGWTPEEDETLRQAVGKFKGKSWKKIAEFFP-DRTEVQCLHRWQKVL 121
                      688*****************************.************986 PP
2Myb_DNA-binding60.24.3e-19127173148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde ++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Thhalv10020579m 127 KGPWTQEEDETIAELVEKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 173
                      79******************************.*************97 PP
3Myb_DNA-binding54.72.3e-17179222146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a+  +G++ W+ Ia+ ++ gRt++++k++w++
  Thhalv10020579m 179 KDAWTSEEELALMNAHLIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 222
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.26470121IPR017930Myb domain
SuperFamilySSF466893.09E-1972135IPR009057Homeodomain-like
SMARTSM007173.3E-1574123IPR001005SANT/Myb domain
PfamPF002494.4E-1675121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2277133IPR009057Homeodomain-like
CDDcd001671.69E-1378121No hitNo description
PROSITE profilePS5129430.462122177IPR017930Myb domain
SuperFamilySSF466898.99E-32124220IPR009057Homeodomain-like
SMARTSM007171.5E-17126175IPR001005SANT/Myb domain
PfamPF002493.1E-18127173IPR001005SANT/Myb domain
CDDcd001674.05E-15129173No hitNo description
Gene3DG3DSA:1.10.10.602.3E-27134181IPR009057Homeodomain-like
PROSITE profilePS5129421.246178228IPR017930Myb domain
SMARTSM007171.5E-15178226IPR001005SANT/Myb domain
PfamPF002492.9E-15179222IPR001005SANT/Myb domain
CDDcd001671.46E-11181224No hitNo description
Gene3DG3DSA:1.10.10.602.6E-22182227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSCNLNPPAS SPDEEEKGEV KMEDECIENK QSTAASCSSV SEGSASSFLK SPAVASPVAA  60
SPTNRRTSGP IRRAKGGWTP EEDETLRQAV GKFKGKSWKK IAEFFPDRTE VQCLHRWQKV  120
LNPDLIKGPW TQEEDETIAE LVEKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPGINKD  180
AWTSEEELAL MNAHLIHGNK WAEIAKVLPG RTDNSIKNHW NSSLKRKSEF YLATGGLPPA  240
AARNGVPDSA TRRSPSCQKR VSDTVPQTSS GTTQINKFDE EDGKGQLNSS VPHEEVVAAS  300
GMTGVSEYAR SPQLPNPKPF PENGGVTNNG YHLYYRPQIE YYMAPEVDKQ RMYGFECGCS  360
PSASPVSFFT PPCRKESSNG LAPRSPESFL REAAKTFPNT PSIFRKRRRK VFVSDSNKAV  420
ETDESKEVDQ KVNDSSERPD CEETQSNGSI AFNVSPPYRI RSKRTAVYTS RQLEFEKADD  480
ETKSSEKDKL LDGDSQLPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-67742275158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-67742275158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404408RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020579m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407683.10.0transcription factor MYB3R-3
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLV4NR950.0V4NR95_EUTSA; Uncharacterized protein
STRINGXP_006407683.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.10.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]