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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Thhalv10020549m | ||||||||
| Common Name | EUTSA_v10020494mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family | C3H | ||||||||
| Protein Properties | Length: 508aa MW: 55597.4 Da PI: 7.8713 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 35.9 | 1.3e-11 | 161 | 185 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C ++++t tCk+G++CkF H+
Thhalv10020549m 161 GEKDCTHYMQTRTCKFGESCKFDHP 185
7889********************8 PP
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| 2 | zf-CCCH | 33.1 | 9.7e-11 | 211 | 237 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ +t CkyG rCkF+H++
Thhalv10020549m 211 PGEPDCPYYIKTQRCKYGLRCKFNHPR 237
5789*********************96 PP
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| 3 | zf-CCCH | 38.6 | 1.8e-12 | 256 | 280 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C f+++tG Ck+G +CkF+H++
Thhalv10020549m 256 EPPCTFYMKTGKCKFGLTCKFHHPK 280
79*********************96 PP
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| 4 | zf-CCCH | 38.7 | 1.7e-12 | 326 | 352 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+f+++tG CkyG++C+++H++
Thhalv10020549m 326 PGEVDCPFYLKTGSCKYGATCRYNHPE 352
57899********************96 PP
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| 5 | zf-CCCH | 40.2 | 5.5e-13 | 407 | 431 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C+++++tG+Ck+G+rC+F+H+
Thhalv10020549m 407 GQSECDYYMKTGECKFGERCRFHHP 431
7899********************8 PP
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| 6 | zf-CCCH | 40.3 | 5.3e-13 | 463 | 484 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+++++tGtCkyG++CkF H+
Thhalv10020549m 463 NCPYYMKTGTCKYGATCKFDHP 484
6********************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00356 | 0.002 | 159 | 186 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.817 | 159 | 187 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-5 | 161 | 186 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.3E-9 | 161 | 185 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 165 | 184 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-4 | 210 | 237 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.76 | 210 | 238 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.0E-7 | 212 | 237 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-5 | 215 | 237 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 216 | 236 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.601 | 253 | 281 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.7E-6 | 253 | 280 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.3E-10 | 256 | 280 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.01E-5 | 257 | 281 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.1E-5 | 258 | 279 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.554 | 325 | 353 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.9E-7 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.8E-10 | 327 | 352 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-5 | 329 | 353 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 331 | 352 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-7 | 405 | 436 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.3E-6 | 405 | 432 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.047 | 405 | 433 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.5E-10 | 407 | 431 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.5E-6 | 411 | 433 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.4E-6 | 458 | 485 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.835 | 458 | 486 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-10 | 463 | 484 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.07E-5 | 463 | 485 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 464 | 483 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003723 | Molecular Function | RNA binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 508 aa Download sequence Send to blast |
MAHRHQLFSY ALQPSYAAAS AVSPAPPAPQ PQPQLQPQPK IGLSSLYGSS AADHYFPDTN 60 FRFLPRDGSE ALSNYSSSLG TLTSSSAMYH HLPNTTTTHL AYPQLIQQHQ EAWPPGVEVP 120 VAASAVEPLP PGVKRTSEDY FTKRLKLEST SHLPVYPQRP GEKDCTHYMQ TRTCKFGESC 180 KFDHPIWVPE GGIPDWKEAP LVPNDDYPER PGEPDCPYYI KTQRCKYGLR CKFNHPRAAA 240 AVSVENQDSL PERPSEPPCT FYMKTGKCKF GLTCKFHHPK DIQLPSSSQE MGTSEALTSD 300 PDATNNPHVT FTAALYHNSK GLPVRPGEVD CPFYLKTGSC KYGATCRYNH PERTAFTPQA 360 AGINYPLVSS TAASVNLGLV NSAASLYQTL AQPTLGALSA IYPQRPGQSE CDYYMKTGEC 420 KFGERCRFHH PADRLNATTK QASQQPNVKL SLAGYPRREG ALNCPYYMKT GTCKYGATCK 480 FDHPAPGEVM AKTSSEADAG GGADTNQ* |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Thhalv10020549m |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK229145 | 0.0 | AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16. | |||
| GenBank | AY024357 | 0.0 | AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006407309.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
| Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
| TrEMBL | V4LE61 | 0.0 | V4LE61_EUTSA; Uncharacterized protein | ||||
| STRING | XP_006407309.1 | 0.0 | (Eutrema salsugineum) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Thhalv10020549m |
| Entrez Gene | 18024821 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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