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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10020494m |
| Common Name | EUTSA_v10020494mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
C3H |
| Protein Properties |
Length: 531aa MW: 58164.2 Da PI: 7.7584 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10020494m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 35.8 | 1.3e-11 | 184 | 208 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C ++++t tCk+G++CkF H+
Thhalv10020494m 184 GEKDCTHYMQTRTCKFGESCKFDHP 208
7889********************8 PP
|
| 2 | zf-CCCH | 33 | 1e-10 | 234 | 260 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ +t CkyG rCkF+H++
Thhalv10020494m 234 PGEPDCPYYIKTQRCKYGLRCKFNHPR 260
5789*********************96 PP
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| 3 | zf-CCCH | 38.5 | 1.9e-12 | 279 | 303 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C f+++tG Ck+G +CkF+H++
Thhalv10020494m 279 EPPCTFYMKTGKCKFGLTCKFHHPK 303
79*********************96 PP
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| 4 | zf-CCCH | 38.6 | 1.7e-12 | 349 | 375 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+f+++tG CkyG++C+++H++
Thhalv10020494m 349 PGEVDCPFYLKTGSCKYGATCRYNHPE 375
57899********************96 PP
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| 5 | zf-CCCH | 40.2 | 5.8e-13 | 430 | 454 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C+++++tG+Ck+G+rC+F+H+
Thhalv10020494m 430 GQSECDYYMKTGECKFGERCRFHHP 454
7899********************8 PP
|
| 6 | zf-CCCH | 40.2 | 5.6e-13 | 486 | 507 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+++++tGtCkyG++CkF H+
Thhalv10020494m 486 NCPYYMKTGTCKYGATCKFDHP 507
6********************8 PP
|
| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.002 | 182 | 209 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.817 | 182 | 210 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-5 | 184 | 209 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.6E-9 | 184 | 208 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 188 | 207 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.76 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-4 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.1E-7 | 235 | 260 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.28E-5 | 238 | 260 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 239 | 259 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.7E-6 | 276 | 303 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.601 | 276 | 304 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.6E-10 | 279 | 303 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.06E-5 | 280 | 304 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 281 | 302 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.554 | 348 | 376 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.9E-7 | 348 | 375 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.1E-10 | 350 | 375 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.09E-5 | 352 | 376 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 354 | 375 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.3E-6 | 428 | 455 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.047 | 428 | 456 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.15E-7 | 428 | 459 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-10 | 430 | 454 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.9E-6 | 434 | 456 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.4E-6 | 481 | 508 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.835 | 481 | 509 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.14E-5 | 486 | 508 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.7E-10 | 486 | 507 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 487 | 506 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 531 aa
Download sequence Send
to blast |
MAHRHQLFSY ALQPSYAAAS AVSPAPPAPQ PQPQLQPQPK IGLSSLYGSS AADHYFPDTN 60
FRFLPRDGSE ALSNYSSSLG TLTSSSAMYH HLPNTTTTHL AYPQLIQQHQ EAWPPGVEVP 120
VAASAVEPLP PGVKRTSEAL YYPTLLGAHN TIGQTEAWYT TDYFTKRLKL ESTSHLPVYP 180
QRPGEKDCTH YMQTRTCKFG ESCKFDHPIW VPEGGIPDWK EAPLVPNDDY PERPGEPDCP 240
YYIKTQRCKY GLRCKFNHPR AAAAVSVENQ DSLPERPSEP PCTFYMKTGK CKFGLTCKFH 300
HPKDIQLPSS SQEMGTSEAL TSDPDATNNP HVTFTAALYH NSKGLPVRPG EVDCPFYLKT 360
GSCKYGATCR YNHPERTAFT PQAAGINYPL VSSTAASVNL GLVNSAASLY QTLAQPTLGA 420
LSAIYPQRPG QSECDYYMKT GECKFGERCR FHHPADRLNA TTKQASQQPN VKLSLAGYPR 480
REGALNCPYY MKTGTCKYGA TCKFDHPAPG EVMAKTSSEA DAGGGADTNQ *
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| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229145 | 0.0 | AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16. |
| GenBank | AY024357 | 0.0 | AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds. |
