PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10020053m | ||||||||
Common Name | EUTSA_v10020053mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | FAR1 | ||||||||
Protein Properties | Length: 847aa MW: 96980.2 Da PI: 7.1372 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.7 | 2.5e-25 | 91 | 193 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY++Y++ +GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e+ +r+ +t+Cka+++vk++ dgkw++++++ Thhalv10020053m 91 SFYQDYSRAIGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSfnrprarqskqdPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFV 184 5*******************************************99999999877654444444499999************************ PP FAR1 83 leHnHelap 91 eHnHel p Thhalv10020053m 185 REHNHELLP 193 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-23 | 91 | 193 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.0E-23 | 291 | 382 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.099 | 571 | 607 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.7E-7 | 582 | 609 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MDIDLRLHSG DLCKEGDDDR GLDNVLQNEH KLHDADEDMD IGKIEDVTVE VQTDDSVGMG 60 VPTVELVEYT EGTNPEPFNG MEFASHGEAY SFYQDYSRAI GFNTAIQNSR RSKTTREFID 120 AKFACSRYGT KREYDKSFNR PRARQSKQDP ENMAGRRTCA KTDCKASMHV KRRPDGKWVI 180 HSFVREHNHE LLPAQAVSEQ TRKIYAAMAK QFAEYKTVIS LKSDSKSSFE KGRSLSVETA 240 DFKVLLDFLS RMQILNSNFF YAVDLGDDQR LKNVFWVDAK SRHNYGSFCD VVSLDITYVR 300 NKYKMPLAVF VGVNQHYQYM VLGCALISDE SAATFSWLME TWLKAMGGQA PKVLITEQDV 360 VLNSIVPGIF PNTQHCLFLW HVLIKVSENL GQVAKQHENF TSKFEKCIYK SWKEEDFARR 420 WWKILSRFGL KDDQWMQSLY EDRRKWAPTY MTNVLLAGMS TPQRADSVNA FFDKYLHKKT 480 SVQEFVKLYD TILQDRCEEE AKADSESWNK QPAMKSPSPF EKSVSEVYTP AVFKKFQIEV 540 LGAIACSPRE ENRDATCSTF RVQDFENNQD FIVTWNQAKA EVSCICRLFE YKGYLCRHTL 600 NVLQCCHLSS IPSQYILKRW TKDAKSRHFS GEPQQLQSRL QRYNDLCQRA LKLNEEASFS 660 QESYNIAFLA IEEALGNCAS VNTSGRSLPD VVTSPTQGLI SVEEDNQSRI AGKTSKKKNP 720 TKKRKVNSEQ EVMPVAAPES LQQMDKLSPR TVGIESYYGT QQSVQNMVQL NLMAPTRDNF 780 YGNQQTIQGL RQLNSIAPSY DSYYAAQQGI HGQGVDFFRP PNFPYDIRDD PNVRTTQLHE 840 DASRHS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10020053m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP001306 | 0.0 | AP001306.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MKA23. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406203.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_006406204.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | V4LYQ9 | 0.0 | V4LYQ9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006406203.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10020053m |
Entrez Gene | 18023660 |