PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020020m
Common NameEUTSA_v10020020mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 897aa    MW: 101581 Da    PI: 6.1912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020020mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13493535144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r  WT+eEd++l  av ++G ++W ++a  +  gR +kqc +rw
  Thhalv10020020m 493 RREWTPEEDKQLRAAVGLFGENDWQSVADALE-GRAGKQCANRW 535
                      678*****************************.*********** PP
2Myb_DNA-binding53.84.3e-17546590146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +grW+ eEd++ + av+++G ++W++Ia+ ++ gRt  qc++rw +
  Thhalv10020020m 546 KGRWSSEEDKRVKVAVTLFGAKNWHKIAQFVP-GRTQVQCRERWVN 590
                      79******************************.***********87 PP
3Myb_DNA-binding507e-16598642146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+rWT+eEd +l +a++++G  +W+++a+++  +Rt+ qc+ rw +
  Thhalv10020020m 598 RDRWTKEEDAKLREAITEHGYSSWSKVASRLS-RRTDSQCRRRWKS 642
                      89******************************.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.993338434IPR017877Myb-like domain
SMARTSM007170.95342436IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-9345361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-9407447IPR009057Homeodomain-like
SuperFamilySSF466895.35E-12417487IPR009057Homeodomain-like
PROSITE profilePS500907.909435487IPR017877Myb-like domain
SMARTSM007170.0017439489IPR001005SANT/Myb domain
PfamPF002491.8E-5441485IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-9448499IPR009057Homeodomain-like
SuperFamilySSF466892.94E-12483536IPR009057Homeodomain-like
PROSITE profilePS5129421.945488543IPR017930Myb domain
SMARTSM007173.4E-11492541IPR001005SANT/Myb domain
PfamPF002494.3E-12493536IPR001005SANT/Myb domain
CDDcd001673.56E-10495536No hitNo description
Gene3DG3DSA:1.10.10.607.4E-16500545IPR009057Homeodomain-like
SuperFamilySSF466893.59E-18519589IPR009057Homeodomain-like
PROSITE profilePS5129415.659545592IPR017930Myb domain
SMARTSM007173.0E-15545594IPR001005SANT/Myb domain
PfamPF002491.1E-14546590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-21547597IPR009057Homeodomain-like
CDDcd001672.89E-11548592No hitNo description
SuperFamilySSF466895.45E-25572647IPR009057Homeodomain-like
PROSITE profilePS5129423.752593648IPR017930Myb domain
SMARTSM007173.2E-12597646IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-19598643IPR009057Homeodomain-like
PfamPF002499.8E-14598643IPR001005SANT/Myb domain
CDDcd001673.30E-12600643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MSRESVHEAD DDEEEDDIGE DLEDLRRACM VSEANSDEVV EKSGSVGADG GGGGEIPSDS  60
ENEDDFEMLG SIKSQLASST GLGDGPLMGL SVPSDSESED DLEMLRSIKR QLALSMDASV  120
PPMGLSDDDE DDSFETLCAI RRRFSAFENS DPEVNLMNDS PGKKKQVHAS DNEPSREILS  180
RSNTCESFPN HDKSVVTVPD SEGVQAGNSL ETCQSSLLPA ASSSFPESAQ AFVDAIRRNR  240
SYQKFLRRKL TEIEVKIEQN EKHKRNVKIV QDFQASCKRI TKQALSQRKD PRVELISTRK  300
SGPRDSSEGN DKKTSPLTLG PLENPCVANY RMAIEKYPVS VDRRNWTTEE NEYLAKGLKQ  360
QFQETLLNEA IERSSDSEGS TQDIYTINES IKNLEITPEM IRQFLPKVNW DQLASIYIKD  420
RSAAECEARW MSSEDPLINH SPWTAEEENN LLLIIQKNCC TDWLDIAVSL GMNRTPFECL  480
AKYQRSLNAD ILRREWTPEE DKQLRAAVGL FGENDWQSVA DALEGRAGKQ CANRWKWSLH  540
PTIEKKGRWS SEEDKRVKVA VTLFGAKNWH KIAQFVPGRT QVQCRERWVN SLDPKVNRDR  600
WTKEEDAKLR EAITEHGYSS WSKVASRLSR RTDSQCRRRW KSLYPHQAAV IQEATRSRRE  660
AIVGNFVDRE SERPALLAGD FLALPEISLE SEPEIVSQKK KCKARRKKSD VECEITLEPE  720
PEIVSQKKKC KARRKKSDVE CGVTLEPEPE IVSEKKKCKA RRKKSDVDCE ITLEPEPEIV  780
SQKKKCKAKR KKSDVECESE ASCAPTERQP KRRRKGLEGR SGDVCRQESD SVCENDENNG  840
GVRFLERCNE NQENVKEKRR RSRRNVAATS SSSTVTINCS QVKVGIKKLK PRRRVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-264096426159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-264096426159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020020m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015327.10.0myb-like protein L isoform X2
TrEMBLV4LCF50.0V4LCF5_EUTSA; Uncharacterized protein
STRINGXP_006406652.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1