PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10019848m

Common Name

EUTSA_v10019848mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 231aa MW: 25924.2 Da PI: 10.4184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019848m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Thhalv10019848m 69 FSCNYCQRKFYSSQALGGHQNAH 91 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.57E-6	66	96	No hit	No description
PROSITE profile	PS50157	11.427	69	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAPIISIDQE ISKIKKRGHQ DFELELTLLP RGTTSSSELN LIDSFKTSSS STSHQHHHQQ 60 EHLEDPRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR GQYYKMSLSS SSTSSAFAFG 120 HGSVSRFSSM ASLPLHGSAN KRSTLGIQAH STIYNPFLGR QTASLSNVFK RQSIHQKLGI 180 GKMLPEKFHH ECAISGNSNS TTPKLERIEH FKSKQEDHNQ FKKIDLTLKL *

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019848m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006389829.1	1e-169	zinc finger protein 1
Swissprot	Q42485	1e-116	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	V4JPM3	1e-168	V4JPM3_EUTSA; Uncharacterized protein
STRING	XP_006389829.1	1e-168	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11858	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-113	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Thhalv10019848m
Entrez Gene	18008489

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]