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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019726m | ||||||||
Common Name | EUTSA_v10019726mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 176aa MW: 20548.1 Da PI: 10.5135 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.9 | 1.3e-18 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 e+ + rqvt++kR++gi+K A+ELS+LCd+++ +++fs+ gk Thhalv10019726m 11 LESFTPRQVTYAKRKHGIIKTAKELSILCDVDIVLLMFSPVGK 53 678899**********************************997 PP | |||||||
2 | K-box | 27 | 1.8e-10 | 112 | 169 | 22 | 83 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 + L+++++ Lq+ + e ++Ls+ +LqqLe+ L ksl +iR++K ++l q ++ q + Thhalv10019726m 112 QVLREKVRFLQTHLS----ELHTRLSVDDLQQLENSLRKSLYRIRAHKVNMLQVQHQQDQFM 169 567888888888744....44489****************************9999988865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.315 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-22 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-15 | 15 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-6 | 113 | 164 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MGRVKLKIKK LESFTPRQVT YAKRKHGIIK TAKELSILCD VDIVLLMFSP VGKASLCCGK 60 HSIGEFIAKF AQLTPQERAK RKLETLEALK KTFMKLDHDV NIAEFLDRRN FQVLREKVRF 120 LQTHLSELHT RLSVDDLQQL ENSLRKSLYR IRAHKVNMLQ VQHQQDQFMS SECINQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019726m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024011321.1 | 1e-111 | agamous-like MADS-box protein AGL30 | ||||
Swissprot | Q1PFA4 | 3e-60 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | V4KB74 | 1e-126 | V4KB74_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006391083.1 | 1e-126 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14956 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69540.1 | 4e-81 | AGAMOUS-like 94 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019726m |
Entrez Gene | 18009291 |
Publications ? help Back to Top | |||
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