PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MIKC_MADS

Protein Properties

Length: 328aa MW: 37486.8 Da PI: 4.6142

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019686m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.3	3.1e-26	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l +s Thhalv10019686m 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58 79******************************************998776 PP
2	K-box	27.3	1.5e-10	121	200	9	88
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 + +++ e+l+qe+ kL++++++ ++e+R++ + + +++e + e+qL + l+++ ++++++l +qi+ ++q Thhalv10019686m 121 AINSDVEELEQEVYKLQQQLHMAEEELRKYEPDPIRFTTMEEYETCEKQLMDTLTRVTQRREHILSDQISSFEASAIQQQ 200 5577899**************************************************************98876665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.819	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-35	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-29	2	85	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.44E-34	2	75	No hit	No description
PRINTS	PR00404	2.0E-24	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-24	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-24	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	9.2E-7	125	194	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK 60 TRIEDVFTRY INLPDQEREN ALSNPDQSRR PDFQSKEYLL RTLQQLKTEN DIALQLTNPA 120 AINSDVEELE QEVYKLQQQL HMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVTQR 180 REHILSDQIS SFEASAIQQQ NLGGPYVNVG GWLAENGPNQ AHMFDSSAHS AMYETLLQGS 240 SSSSNQNNTM GECHMTNPNG DMYQEWAQAY TSPTGLNPTP MFPPMQHQHG VVGPNMEESE 300 IPVMTREAQA DHEVSDYDIR MPQLSSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	4e-17	1	90	1	91	MEF2 CHIMERA
6bz1_B	4e-17	1	90	1	91	MEF2 CHIMERA
6bz1_C	4e-17	1	90	1	91	MEF2 CHIMERA
6bz1_D	4e-17	1	90	1	91	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019686m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446441	0.0	DQ446441.1 Arabidopsis thaliana clone pENTR221-At1g77980 MADS-box family protein (At1g77980) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390037.1	0.0	agamous-like MADS-box protein AGL66
Swissprot	Q1PFC2	0.0	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	V4KJ82	0.0	V4KJ82_EUTSA; Uncharacterized protein
STRING	XP_006390037.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	0.0	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Thhalv10019686m
Entrez Gene	18009032

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]