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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10019683m |
| Common Name | EUTSA_v10019683mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
bHLH |
| Protein Properties |
Length: 94aa MW: 10622.9 Da PI: 9.3968 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10019683m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 30 | 9.1e-10 | 20 | 61 | 14 | 54 |
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
d+iN+ + +L++llP++ + +s K+s a +L+++++YI++L
Thhalv10019683m 20 DQINELIIKLQQLLPELRdSRRSDKVSAARVLQETCNYIRNL 61
79**************55599*******************99 PP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Atypical and probable non DNA-binding bHLH transcription factor required for MONOPTEROS-dependent root initiation in embryo. Promotes the correct definition of the hypophysis cell division plane. Transcriptionally controlled by MONOPTEROS. Moves from its site of synthesis in pro-embryos cells into the hypophysis. Regulates brassinosteroid (BR) signaling by sequestering negative BR signaling components. May function as positive regulator of gibberellin signaling. May play a role in the regulation of light signaling and possibly auxin signaling. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:22339648}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK227395 | 1e-123 | AK227395.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-05-N07. |
| GenBank | AY088286 | 1e-123 | AY088286.1 Arabidopsis thaliana clone 519 mRNA, complete sequence. |
| GenBank | BT003046 | 1e-123 | BT003046.1 Arabidopsis thaliana At1g74500 gene, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G74500.1 | 6e-47 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Lu KJ,De Rybel B,van Mourik H,Weijers D
Regulation of intercellular TARGET OF MONOPTEROS 7 protein transport in the Arabidopsis root.
Development, 2018.
[PMID:29358212] - Baesso B, et al.
Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
Plant Biol (Stuttg), 2018. 20(3): p. 426-432
[PMID:29450949]
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