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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Thhalv10019494m |
| Common Name | EUTSA_v10019494mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
LBD |
| Protein Properties |
Length: 238aa MW: 25686.9 Da PI: 7.4431 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10019494m | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94 | 1.7e-29 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C++dC+++p++ +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++ +q
Thhalv10019494m 4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQ 97
6*********************9999767889************************************************************** PP
DUF260 90 lkaelal 96
+++e +l
Thhalv10019494m 98 AAVESVL 104
*999876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH 60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV ESVLNGLPIT HTPLPSASAS 120
HQIIPPHRTY DIRHVVKDPT TGGDSSESLS LAPRVNGNKT KTQTGRFKRI AETVSYQTGE 180
CSHDAWQLGS SGATHGYGQL ALENVESPRE APLNQSSNLG FDDQVDTNEV GLELRLG*
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