PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019164m
Common NameEUTSA_v10019164mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 200aa    MW: 23147.3 Da    PI: 8.4513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019164mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.5e-0682124754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++E++RR+ i+++ + L+ + P +      K + a+ Le  veY+ksL
  Thhalv10019164m  82 MMEKKRRQLIRDKVDILQAMTPYC-----AKSDLATKLEGIVEYMKSL 124
                      79*********************8.....69999999*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.26175124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1079142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.76E-680128No hitNo description
SMARTSM003535.2E-481130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-881136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEINNSKEDI SQKEICSLSH LISSLSSEDQ NELNPLQEIF RSHSSEPKDD VTKNIDQRDK  60
RDHCNKSNRA TKRYRSMEYR VMMEKKRRQL IRDKVDILQA MTPYCAKSDL ATKLEGIVEY  120
MKSLKHQRDI MSKAYTESAG YMSPFYAAQA PCMAPPYTTP WCYYAPGIPM MPHQNIPFNP  180
LFRQFTSQTH DKAPPDLTQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269|PubMed:23874927, ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019164m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391165.11e-149transcription factor bHLH109
SwissprotQ5XVH06e-59BH109_ARATH; Transcription factor bHLH109
TrEMBLV4MB791e-148V4MB79_EUTSA; Uncharacterized protein
STRINGXP_006391165.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150321417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68240.12e-55bHLH family protein
Publications ? help Back to Top
  1. Gliwicka M,Nowak K,Balazadeh S,Mueller-Roeber B,Gaj MD
    Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana.
    PLoS ONE, 2013. 8(7): p. e69261
    [PMID:23874927]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]