PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018958m
Common NameEUTSA_v10018958mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 290aa    MW: 32818.4 Da    PI: 5.9221
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018958mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.7e-102202581854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      lF+   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Thhalv10018958m 220 LFQHflHPYPNDAEKLMLASQTGLSKNQVSNWFINARVR 258
                      5775569******************************98 PP
2BELL100.11.7e-3281152172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e++el++k++kLlslle+V++r+  y++ql++vissFe +ag gs+k+Yt lAl+a++rhF +L++ai +q+
  Thhalv10018958m  81 ENHELHIKISKLLSLLEQVEERFDIYCNQLEQVISSFEGIAGEGSSKVYTGLALQAMTRHFGSLQEAILSQL 152
                      689******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-1311150IPR006563POX domain
PfamPF075264.0E-2819148IPR006563POX domain
SMARTSM003894.3E-10202266IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-28207268IPR009057Homeodomain-like
CDDcd000861.45E-11208263No hitNo description
SuperFamilySSF466893.94E-18208271IPR009057Homeodomain-like
PfamPF059208.5E-18219258IPR008422Homeobox KN domain
PROSITE profilePS5007111.823221262IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEEFRVTHEF SSLTSISLDS RYVKAVRCLL EEVIDIGGRE VELCNDILIQ QLFPGRRRSC  60
FGLSSQIKSE LCSSGFMSLP ENHELHIKIS KLLSLLEQVE ERFDIYCNQL EQVISSFEGI  120
AGEGSSKVYT GLALQAMTRH FGSLQEAILS QLSSLRRRFI ISQDLVPKII SSGLSQLSLF  180
DGNTSSSLQR LGLVQGPQRH AWKPIRGLPE TSVAILRAWL FQHFLHPYPN DAEKLMLASQ  240
TGLSKNQVSN WFINARVRLW KPMIEEMYRE EFGDSSDESM QREGNDDSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-18208269566Homeobox protein Meis2
3k2a_B9e-18208269566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018958m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464320.0DQ446432.1 Arabidopsis thaliana clone pENTR221-At1g75430 homeodomain-containing protein (At1g75430) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390303.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLV4K9880.0V4K988_EUTSA; Uncharacterized protein
STRINGXP_006390303.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-179BEL1-like homeodomain 11