PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10018957m

Common Name

EUTSA_v10018950mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MYB_related

Protein Properties

Length: 291aa MW: 31814.2 Da PI: 8.2063

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018957m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.5	3.1e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +++++G g Wk I r ++R+ ++k++w+++ Thhalv10018957m 5 KLKWTAEEEEALLAGIAKHGAGKWKNILRDPEfadqlTNRSNIDLKDKWRNL 56 689***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.477	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	4.81E-16	3	62	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	8.28E-21	7	56	No hit	No description
SuperFamily	SSF46785	5.44E-13	123	199	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	4.2E-14	124	189	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	2.3E-9	125	194	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	22.125	126	194	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	2.1E-7	128	187	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGNQKLKWTA EEEEALLAGI AKHGAGKWKN ILRDPEFADQ LTNRSNIDLK DKWRNLSVSP 60 GTQCSKDKAR PTKVKDEAVT PAAVAVTTTP PPNDNSSPSP ATSLRRSAST EFSIDNSCNI 120 VVDTKNAPRY DGMIFEALSS LVDANGSDVG SIFSFIEPRH EVPPNFRRVL SSRLRRLAAQ 180 GKLVKLQNFY KLPDRPGATR TPALKLKETT NIKPRQSNNQ APAVSQEMIE EAAITAACKV 240 VEAENKIGVA KVAVEDLEKM TKLAEETEIL LELAKEIHEQ CCRGELVLLA *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00231	DAP	Transfer from AT1G72740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018957m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF372925	8e-59	AF372925.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
GenBank	AY124849	8e-59	AY124849.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390623.1	0.0	telomere repeat-binding factor 5 isoform X4
Swissprot	F4IEY4	1e-123	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	V4K9Z4	0.0	V4K9Z4_EUTSA; Uncharacterized protein
STRING	XP_006390624.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	2e-97	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thhalv10018957m
Entrez Gene	18009445

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]