PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018946m
Common NameEUTSA_v10018946mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family DBB
Protein Properties Length: 295aa    MW: 32252.8 Da    PI: 6.5472
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018946mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.51e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  Thhalv10018946m  4 QCNVCEAAEATVLCCADEAALCWACDEKVHAAnklagkHQRVPL 47
                     7******99*********************66899999999986 PP
2zf-B_box25.33.1e-085490337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                      +kC+ ++e    +fC +++ llC++C +++H     H
  Thhalv10018946m 54 IPKCDICQEASGFFFCLQDRALLCRKCDVAIH-TvnpH 90
                     689*******9********************9.33452 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48147IPR000315B-box-type zinc finger
CDDcd000211.89E-7347No hitNo description
PfamPF006432.7E-5447IPR000315B-box-type zinc finger
SMARTSM003362.1E-10447IPR000315B-box-type zinc finger
SMARTSM003363.8E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595299IPR000315B-box-type zinc finger
PfamPF006433.8E-65589IPR000315B-box-type zinc finger
CDDcd000215.73E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKIQCNVCEA AEATVLCCAD EAALCWACDE KVHAANKLAG KHQRVPLSVS SSSIPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT GIRVGLESTD AGPSTKSSPS  120
NDDKAMETKP FALPSSEPQK MDFNHHHHHE VVLPETKVSD HISTKLPFAS SGSATGSIPQ  180
WQLEEIFGLT DFDQSYEYME NNGSSKADTS RRGDSDSSSM MRSGEDDGED NNNCLGGETS  240
WAVPQIHSPP TASGLNWPKH HHHSVFVPDI SSSTPYTGSS PNHYQRVGKR RRRF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018946m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526340.0AK352634.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389971.10.0B-box zinc finger protein 22
SwissprotQ9SYM21e-178BBX22_ARATH; B-box zinc finger protein 22
TrEMBLE4MVT70.0E4MVT7_EUTHA; mRNA, clone: RTFL01-06-M18
TrEMBLV4KBZ30.0V4KBZ3_EUTSA; Uncharacterized protein
STRINGXP_006389971.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-176light-regulated zinc finger protein 1