PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 316aa MW: 35572.2 Da PI: 5.7619

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018902m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.9e-32	10	64	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Thhalv10018902m 10 KPRLKWTCELHQRFIEAVTQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 64 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.555	7	67	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-28	8	64	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-15	9	64	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-22	10	65	IPR006447	Myb domain, plants
Pfam	PF00249	5.4E-6	12	63	IPR001005	SANT/Myb domain
Pfam	PF14379	7.5E-23	112	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSLVLSTDAK PRLKWTCELH QRFIEAVTQL GGPNKATPKG LMKAMEIPGL TLYHLKSHLQ 60 KYRLGKSLKF DDNKLEVSSA SETQESESKN DSREFRGSVN EENNNLANEG SQITEALQLQ 120 MEVQKKLHEQ IEVQRHLQVK IEAQGKYLQS VLMKAQQTLA GYTSSTLGMD FARTELSRLA 180 SLVNPSSSLS EVTQAEGYEE AEDVEEGFLW CKKPENRGIR LPRYSVESSL TSSESSETKL 240 NSNEDERKSM ELPLMEIKSE VRIGEKRSLN DVVCMEQQPI KKRDFGVDDE QHLRLSLNSY 300 KKDMGTCPNI GLGLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018902m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029516	1e-174	BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390997.2	0.0	myb family transcription factor PHL8
Swissprot	F4I274	1e-166	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	V4KLX1	0.0	V4KLX1_EUTSA; Uncharacterized protein
STRING	XP_006390997.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-161	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10018902m
Entrez Gene	18009197

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]