PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018898m
Common NameEUTSA_v10018889mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 318aa    MW: 35080.8 Da    PI: 5.1469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018898mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-154897255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  Thhalv10018898m 48 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 97
                     899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1844117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-2245119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3554696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-1448101No hitNo description
PfamPF000109.4E-134897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1152102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRTGKGNLEE EDYGEEDFGS KREGPSSNNS NTAASRDSKE NDKASAIRSK HSVTEQRRRS  60
KINERFQILR ELIPNSEQKR DTASFLLEVI DYVQYLQEKV QKYEGSYPGW SQEPTKLTPW  120
RNNHWRVQSL ANHPVAVSNG SGPVIPFPGK FDENTVVSTP AIIAEMQNPV ESDKGRAMVC  180
KPIDIQPELD DKGLPPVQPI PPLVHGEQAN NECPATNDGL GQSNDMVIEG GTISISTVYS  240
HELLSSLTQA LQNAGIDLSH AKLSVQIDLG KRANQGLTRD NPSNKNPSSS DIEGATQIRD  300
PNVEEESEHS QKRMKTL*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018898m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526890.0AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391065.10.0transcription factor BIM2 isoform X2
SwissprotQ9CAA40.0BIM2_ARATH; Transcription factor BIM2
TrEMBLE4MVZ20.0E4MVZ2_EUTHA; mRNA, clone: RTFL01-03-H22
TrEMBLV4MAX50.0V4MAX5_EUTSA; Uncharacterized protein
STRINGXP_006391066.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.10.0BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]