PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018867m
Common NameEUTSA_v10018867mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 326aa    MW: 36506.8 Da    PI: 4.8726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018867mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15126177155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Thhalv10018867m 126 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 177
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.29E-13124181No hitNo description
PROSITE profilePS5088816.418125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-17125186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.795250325IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALEAIVYPQ DPFSYISCKN FPFHDLYFQQ EEDRDPQDTK NNIKLGQELE QEQRLASINY  60
DGNKSGESDV YIYNEEDLQW PRDDLLYGSA VDTENQPPPS DVATGGGRRK RRRMRSSKNK  120
EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPSYAQRG DQASIVGGAI NYLKELEQHL  180
QSMEPPVKTT DVAEEAGAAA GDSTNIIAAS SLGPFSDFFA FPQYSSRPSS SSVAEGTAEI  240
EVTMVESHAS VKILAKKRPR QLLKLVASIQ SLRLTLLHLN VTTRDNSVLY SISLKVEEGS  300
QLNTVEDIAA AMNQILRRIE EESSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RKRRR
2126137RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018867m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390686.10.0transcription factor bHLH96
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLV4KDW80.0V4KDW8_EUTSA; Uncharacterized protein
STRINGXP_006390686.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-180bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]