PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10018758m

Common Name

EUTSA_v10018758mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 361aa MW: 39968.5 Da PI: 6.1988

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018758m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	5e-14	169	215	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L Thhalv10018758m 169 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 215 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	169	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	170	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-14	170	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.43E-5	179	218	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MCAKKEEEVE SSSGAMNNIQ NYQNDLFFHQ LISHHHHHHQ DPSQSETFGA PSNNVGSGFT 60 IFSQDSVSPI WPTSIQPQFD TFPPTSSPAS FYGSFFNRSR AHHQGLQFGY EGFGGATSAS 120 HHHHEQLRIL SEALGPVVQA GSGPFGLQAE LGKMTAQEIM DAKALAASKS HSEAERRRRE 180 RINNHLAKLR SILPNTTKTD KASLLAEVIQ HVKELKRETS VISETNLVPT ESDELTVAFS 240 EEEETGDGRF VIKATLCCED RSDLLPDMIK TLKAMRLKTL KAEITTVGGR VKNVLFITGE 300 ESSGEEEMEE YCIGTIEEAL KAVMEKSNVE ESSPSGNAKR QRMTSHNTIT IVEQQQQHHR 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MCAKKEEEVE SSSGAMNNIQ NYQNDLFFHQ LISHHHHHHQ DPSQSETFGA PSNNVGSGFT  60
IFSQDSVSPI WPTSIQPQFD TFPPTSSPAS FYGSFFNRSR AHHQGLQFGY EGFGGATSAS  120
HHHHEQLRIL SEALGPVVQA GSGPFGLQAE LGKMTAQEIM DAKALAASKS HSEAERRRRE  180
RINNHLAKLR SILPNTTKTD KASLLAEVIQ HVKELKRETS VISETNLVPT ESDELTVAFS  240
EEEETGDGRF VIKATLCCED RSDLLPDMIK TLKAMRLKTL KAEITTVGGR VKNVLFITGE  300
ESSGEEEMEE YCIGTIEEAL KAVMEKSNVE ESSPSGNAKR QRMTSHNTIT IVEQQQQHHR  360
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018758m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072161	0.0	AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBank	AY122983	0.0	AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391094.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	V4JST7	0.0	V4JST7_EUTSA; Uncharacterized protein
STRING	XP_006391094.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10018758m
Entrez Gene	18009397

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]