PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 372aa MW: 41359.3 Da PI: 7.6284

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018737m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.4e-32	224	279	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+ Thhalv10018737m 224 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 279 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.86E-18	221	282	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.086	221	281	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-28	222	282	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-26	224	279	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-8	226	277	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0055062	Biological Process	phosphate ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MMVHKMETDH AQKMQRCHEY VEALEEEQKK ILVFQRELPL CLELVTKTIE AYRKELSGTS 60 SEQIHGQSDC SEQTTSFCGG PVLEEFIPIK KSSLSQEEED GEHESLEPEI NNVDKKKSDW 120 LRSVQLWNNP SPDLNPIEVS DSERVVAKKA KVVEVKPNNG GAFQPFRKEK KRVFLETQPP 180 QPAVKAATTT SSTTETTGGG KSDSVKAREE QMKQDQSQSQ THRKQRRCWS PELHRRFLHA 240 LQQLGGSHVA TPKQIRDHMK VDGLTNDEVK SHLQKYRLHT RRPATSVTAQ SNGNSQQPQF 300 VVVGGIWVPS PQDYPPPSDV YAPVAEVQPP PLPLPPQSPK LSVERSSGRC NSPAASSSTN 360 TTTTSSASPV S*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MMVHKMETDH AQKMQRCHEY VEALEEEQKK ILVFQRELPL CLELVTKTIE AYRKELSGTS  60
SEQIHGQSDC SEQTTSFCGG PVLEEFIPIK KSSLSQEEED GEHESLEPEI NNVDKKKSDW  120
LRSVQLWNNP SPDLNPIEVS DSERVVAKKA KVVEVKPNNG GAFQPFRKEK KRVFLETQPP  180
QPAVKAATTT SSTTETTGGG KSDSVKAREE QMKQDQSQSQ THRKQRRCWS PELHRRFLHA  240
LQQLGGSHVA TPKQIRDHMK VDGLTNDEVK SHLQKYRLHT RRPATSVTAQ SNGNSQQPQF  300
VVVGGIWVPS PQDYPPPSDV YAPVAEVQPP PLPLPPQSPK LSVERSSGRC NSPAASSSTN  360
TTTTSSASPV S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269\|PubMed:27016098}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00218	DAP	Transfer from AT1G68670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018737m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269\|PubMed:27016098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391112.1	0.0	transcription factor HHO2
Swissprot	Q8VZS3	1e-148	HHO2_ARATH; Transcription factor HHO2
TrEMBL	V4KM61	0.0	V4KM61_EUTSA; Uncharacterized protein
STRING	XP_006391112.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	1e-131	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10018737m
Entrez Gene	18009301

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098] Sun X, et al. The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides. J. Exp. Bot., 2018. 69(7): p. 1749-1764 [PMID:29385617]