PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018711m
Common NameEUTSA_v10018711mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 381aa    MW: 41543.8 Da    PI: 8.8597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018711mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-09326327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      elCr+f+r G C++G+ C+F H++
  Thhalv10018711m  3 KELCRNFQR-GSCRFGEGCRFLHPQ 26
                     69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.2E-6126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-5225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-7326IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRFGEGC RFLHPQQAKP NNPFGFGTQS RDQQPQQQQQ KSSNPFGFGV  60
QGGSNRPNQF QPFENKWQRT PSTPGGGAST QQTGKQTQQA DHKCTDPAAC KRVMQDDYKN  120
ERPMWKLTCY GHWKYFPCDV TGDISYEELR AMAYDEAKRG IPLQSIVERE RNLQNSKIAE  180
FENFLRNPYT GSVTTNQSPF AAPTPRIFPP ANQINSPPAF SSFNQQPAFP NTNGAGVSSS  240
GPPNPFARFN QQPNAFSVNT PQTVPSGIAT GPSGFQSQPS VTFKPASFGP GPGLAPAPQN  300
SNMFPSITPT PAPNTSHTNQ NGFNFNSPVA SFTAPVTDTT NTSSGTELQA EGAPVDTSIW  360
LKEKWNPGEI PEQAPPSAFV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018711m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012531.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLV4JQW50.0V4JQW5_EUTSA; Uncharacterized protein
STRINGXP_006390319.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.20.0C3H family protein