PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WRKY

Protein Properties

Length: 395aa MW: 44190.4 Da PI: 7.2575

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018677m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.9	7.4e-27	216	275	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++ +tYeg+H+h+ Thhalv10018677m 216 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 275 8*************************99******934578899********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.8E-28	200	277	IPR003657	WRKY domain
PROSITE profile	PS50811	24.707	210	277	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-24	211	277	IPR003657	WRKY domain
SMART	SM00774	6.6E-33	215	276	IPR003657	WRKY domain
Pfam	PF03106	5.2E-25	216	275	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MIKEAINSCV YPFDGVMAES DKVYDKLSAE SDKEVELDAT KAKVEKVREE NENLKLLLSR 60 ILTDYNSLQM HVSNVIRQQR EASMELDINS HDSFGVDISL RLGRSDMNIS KKEDKIEKIC 120 PDKISDDKKD GSDMKRSLLV LGLPIQSCET EQNMKLDNLS RDARNKNEEN KCGSSRKDFK 180 TARNVDRQEV LEGHEQPCLK KTRVCVKAPC EDPSINDGCQ WRKYGQKTAK ANPLPRAYYR 240 CSMSSNCPVR KQVQRCGEDD TSAYMTTYEG NHDHPLPMEA THMAAGTSAA ASLLQSGSSS 300 SSASLSYYFP FHHFSVSTTN SHPTVTLDLT RPNYLNQLPN YPLSSSSLSF SSSDRPSSSN 360 SHTLSFNGLR TQAPLSTYSQ MPRLSHQTKL SEQQ*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MIKEAINSCV YPFDGVMAES DKVYDKLSAE SDKEVELDAT KAKVEKVREE NENLKLLLSR  60
ILTDYNSLQM HVSNVIRQQR EASMELDINS HDSFGVDISL RLGRSDMNIS KKEDKIEKIC  120
PDKISDDKKD GSDMKRSLLV LGLPIQSCET EQNMKLDNLS RDARNKNEEN KCGSSRKDFK  180
TARNVDRQEV LEGHEQPCLK KTRVCVKAPC EDPSINDGCQ WRKYGQKTAK ANPLPRAYYR  240
CSMSSNCPVR KQVQRCGEDD TSAYMTTYEG NHDHPLPMEA THMAAGTSAA ASLLQSGSSS  300
SSASLSYYFP FHHFSVSTTN SHPTVTLDLT RPNYLNQLPN YPLSSSSLSF SSSDRPSSSN  360
SHTLSFNGLR TQAPLSTYSQ MPRLSHQTKL SEQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-19	215	277	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018677m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390964.1	0.0	probable WRKY transcription factor 36
Swissprot	Q9CAR4	1e-158	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	V4JSI6	0.0	V4JSI6_EUTSA; Uncharacterized protein
STRING	XP_006390964.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-147	WRKY DNA-binding protein 36

Link Out ? help Back to Top
Phytozome	Thhalv10018677m
Entrez Gene	18008054

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]