PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018638m
Common NameEUTSA_v10018638mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family SBP
Protein Properties Length: 411aa    MW: 46262.5 Da    PI: 8.061
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018638mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.75.9e-42132207277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      Cqv gC++dls  k+yh+rh+vCe+hsk++vv+vsg+eqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++
  Thhalv10018638m 132 CQVYGCNMDLSFSKDYHKRHRVCETHSKTSVVIVSGIEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPS 207
                      **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-33128193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.573129206IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.28E-39130209IPR004333Transcription factor, SBP-box
PfamPF031104.6E-32132205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDSWSYGRSV FLENGTVLPS DSFAQSRKAM AGYEQRLSNE FENDDDVLMS HMAGKSNGFS  60
AVSISKMASS SCLAPSSLLP VEEDEEENQS SSSKLSRIDF KVRSFLDYEN DGTSSRAKKT  120
RASNLCPQNP LCQVYGCNMD LSFSKDYHKR HRVCETHSKT SVVIVSGIEQ RFCQQCSRFH  180
FLSEFDDGKR SCRRRLAGHN ERRRKPSFYF LPGKRHKLLR TSQGNKFLEA SSVNDFSLVL  240
PEAFPGNFLY RVTDEQDHCA SRLVSFKDEP TCSMFPAIAQ NNSRRIYESK ARIYSPEASG  300
VSSIWDLHEA APRSTCALSL LSAQSQQHFS ETPSPNTAFS ITKPNQNLNQ MQPLWMDPGK  360
TSSVSSSRNG KGSSTVDLLQ LSSHLQRIEQ QRNITDEVKQ EYNELYFPSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301312051084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018638m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391054.10.0squamosa promoter-binding-like protein 6
RefseqXP_024007394.10.0squamosa promoter-binding-like protein 6
RefseqXP_024007399.10.0squamosa promoter-binding-like protein 6
SwissprotQ94JW80.0SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLV4JSQ40.0V4JSQ4_EUTSA; Uncharacterized protein
STRINGXP_006391054.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-179SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]