PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018436m
Common NameEUTSA_v10018436mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 503aa    MW: 55456.7 Da    PI: 5.1466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018436mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.32.8e-1341414971374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkf 93 
                      lv++Ll+cAeav++++++la+al++++  las+++ +m+++a+yf+e+La+r++r    +y    p+++     s+    l++ f+e +P+lkf
  Thhalv10018436m 141 LVHALLACAEAVQQNNFKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR----IY----PRDDI--GLSSFSDTLQVhFYESCPYLKF 224
                      689****************************************************....55....33332..223333333334********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +h+taNqa+lea+++ e+vH+iD++++qGlQWpaL+qaLa Rp+gpp +R+Tg+gs  s   e+++e+g++L ++A+++gv+fef+ +v ++l+
  Thhalv10018436m 225 AHFTANQAMLEAFATVEKVHVIDLGLNQGLQWPALIQALAVRPNGPPDFRLTGIGS--SLTGESIQEVGWKLGQLASTIGVNFEFKSIVLNNLS 316
                      ********************************************************..5699******************************** PP

             GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      dl++e+++++p  E++aVn+v++lhrll++s+s+e+    +L+++k ++P++++vveqea+hn+++Fl+rf+e+l+yys+lfdsle       +
  Thhalv10018436m 317 DLKPEMIEIRPgLESVAVNSVFELHRLLANSGSIEK----FLSAIKLIEPDIMTVVEQEANHNGANFLDRFTESLHYYSSLFDSLEGP----PS 402
                      ***********88***********************....*********************************************999....46 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +++++++ +lgr+i n+vaceg++r+erhetl++Wr+rl+++GFkpv+++++a kqa++ll+ ++  dgy+vee++g+l+lgW++rpL+++SaW
  Thhalv10018436m 403 QDRVMSELYLGRQILNLVACEGEDRVERHETLNQWRNRLGSSGFKPVNIGSNAFKQASMLLALYAgADGYKVEENEGCLLLGWQTRPLIATSAW 496
                      677788888************************************************************************************* PP

             GRAS 374 r 374
                      r
  Thhalv10018436m 497 R 497
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.6E-372695No hitNo description
PfamPF120413.1E-312689IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098564.956115476IPR005202Transcription factor GRAS
PfamPF035149.6E-132141497IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MKREHNHQES SGGKVGTSKE EAGGFDELLV VLGYKVRSSD MADVAHKLEQ LEMVLGDGIS  60
NLSDDTVHYN PSDISGWVET LISDLNPTRN QEKPDLDSEY DLSAIPGSAA YPRGKRTRMG  120
SDSSTTRPMV VMDSQETGVR LVHALLACAE AVQQNNFKLA DALVKHVGLL ASSQAGAMRK  180
VATYFAEGLA RRIYRIYPRD DIGLSSFSDT LQVHFYESCP YLKFAHFTAN QAMLEAFATV  240
EKVHVIDLGL NQGLQWPALI QALAVRPNGP PDFRLTGIGS SLTGESIQEV GWKLGQLAST  300
IGVNFEFKSI VLNNLSDLKP EMIEIRPGLE SVAVNSVFEL HRLLANSGSI EKFLSAIKLI  360
EPDIMTVVEQ EANHNGANFL DRFTESLHYY SSLFDSLEGP PSQDRVMSEL YLGRQILNLV  420
ACEGEDRVER HETLNQWRNR LGSSGFKPVN IGSNAFKQAS MLLALYAGAD GYKVEENEGC  480
LLLGWQTRPL IATSAWRFNR VE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6514849626378Protein SCARECROW
5b3h_A4e-6514849625377Protein SCARECROW
5b3h_D4e-6514849625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018436m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391387.10.0DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLV4KMZ40.0V4KMZ4_EUTSA; Uncharacterized protein
STRINGXP_006391387.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]