PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018275m
Common NameEUTSA_v10018275mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 629aa    MW: 71805.9 Da    PI: 6.4749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018275mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.39.8e-5661341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v
  Thhalv10018275m   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98 
                      79****************************.99***************6434555777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  Thhalv10018275m  99 TS-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-644156IPR003441NAC domain
PROSITE profilePS5100561.0256156IPR003441NAC domain
PfamPF023652.3E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKLDEQQHHV TKRNKATTNS  180
EQSTSSTCLY SDGMYENLEY AVSPDPEPNQ LGNISSSGME KIENKWSQFM SHDTPLNFPV  240
QSQFCSQYGS ISYPPSKVEI ALECARVQNR MLPPVPPLHG EEFTHGEYLG NNVANDTDEM  300
LSKIIALAQA SHEPQNCLDS WEVASGSAYF HGDFNYSGEK TTGSWVDANM KAVDMQEHVG  360
RFKEERRVEN LRWVGVSSKE LEKSFIEEHS TVVPIEDIWS YRRDDPEHEH QDGVGVNNNG  420
DVDDVYTLEF SDNEHIGNIS DKINSSDHDT TSSSHFEMIK KVEVSHGLFV TTRQVTNTFF  480
QQIVPSQTVI VYINPTGENK YFNEMTSKEE VHVLKQQINP QIESIVSKIL GPWRKFVYVI  540
GFIPMLLLMR CVHQRDDSKK NRSSEGDCID RGTIFMMKNA VVRRKFWNKK EDNGIVDVQG  600
LRVQDSFMLK KLGLSLAIIL AVSTMCLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-56116212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-56116212171NO APICAL MERISTEM PROTEIN
3swm_A1e-56116215174NAC domain-containing protein 19
3swm_B1e-56116215174NAC domain-containing protein 19
3swm_C1e-56116215174NAC domain-containing protein 19
3swm_D1e-56116215174NAC domain-containing protein 19
3swp_A1e-56116215174NAC domain-containing protein 19
3swp_B1e-56116215174NAC domain-containing protein 19
3swp_C1e-56116215174NAC domain-containing protein 19
3swp_D1e-56116215174NAC domain-containing protein 19
4dul_A1e-56116212171NAC domain-containing protein 19
4dul_B1e-56116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018275m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391326.10.0NAC domain-containing protein 86
TrEMBLV4KFM30.0V4KFM3_EUTSA; Uncharacterized protein
STRINGXP_006391326.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28