PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 635aa MW: 74133.2 Da PI: 7.3146

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10018262m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++++eHnHel p Thhalv10018262m 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHELLP 97 9**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-24	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.1E-28	211	303	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.472	480	516	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.8E-9	480	514	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	491	518	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MEFDTHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHELLPEQA HFFRSHRNTE PVNPDSRLRR 120 KKNNPLAACK HLSAYHDLGF LDGYMRNQHD KGRRLVIGNG DAQILLEFLM RLQEENPKFF 180 FAVDFSEDHL LRNVFWVDAK GIEDYKSFSD VVSFDTTYLV SKYKLPLVLF VGVNHHVQPV 240 LLGCGLIADD TVYTYVWLMQ SWLLAMGGST PKVMLSDQNN SIKAAIAAVL PETRHCYCLW 300 HVLDRLPRNL DYWSMWQDTF MKKLFKCIYR SWSEEEFDKR WLKLIDKFHL RDVQWMRSLY 360 EERNFWAPTF MRGVTFAGLS TRNRSESVNS LFDRYVQAET SLKEFLEGYG LMLEDRYEEE 420 AKADFDAWHE APELKSPSPF EKQMLLVYTH EIFRKFQSRF WESEEGTTYS VKDFEDDQKY 480 LVDWNESKTD IHCSCRCFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT NAARNRHQIS 540 GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDVAMFA MKEAFKQCAI KLNTIEHPAM 600 CGEPVQEENQ YGSTSKQIGP EPNIHAEPGL ARSS*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MEFDTHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHELLPEQA HFFRSHRNTE PVNPDSRLRR  120
KKNNPLAACK HLSAYHDLGF LDGYMRNQHD KGRRLVIGNG DAQILLEFLM RLQEENPKFF  180
FAVDFSEDHL LRNVFWVDAK GIEDYKSFSD VVSFDTTYLV SKYKLPLVLF VGVNHHVQPV  240
LLGCGLIADD TVYTYVWLMQ SWLLAMGGST PKVMLSDQNN SIKAAIAAVL PETRHCYCLW  300
HVLDRLPRNL DYWSMWQDTF MKKLFKCIYR SWSEEEFDKR WLKLIDKFHL RDVQWMRSLY  360
EERNFWAPTF MRGVTFAGLS TRNRSESVNS LFDRYVQAET SLKEFLEGYG LMLEDRYEEE  420
AKADFDAWHE APELKSPSPF EKQMLLVYTH EIFRKFQSRF WESEEGTTYS VKDFEDDQKY  480
LVDWNESKTD IHCSCRCFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT NAARNRHQIS  540
GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDVAMFA MKEAFKQCAI KLNTIEHPAM  600
CGEPVQEENQ YGSTSKQIGP EPNIHAEPGL ARSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10018262m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009978	0.0	AC009978.3 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence.
GenBank	AC012394	0.0	AC012394.3 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence.
GenBank	AK221406	0.0	AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBank	BT010456	0.0	BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024009362.1	0.0	LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	V4M8Q6	0.0	V4M8Q6_EUTSA; Uncharacterized protein
STRING	XP_006390210.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Thhalv10018262m
Entrez Gene	18009039

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]