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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10018234m |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
HD-ZIP |
| Protein Properties |
Length: 667aa MW: 74583.1 Da PI: 6.47 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10018234m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 66.2 | 4.5e-21 | 99 | 154 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k
Thhalv10018234m 99 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 154
7999************************************************9877 PP
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| 2 | START | 122.9 | 4e-39 | 256 | 406 | 1 | 129 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79
e+a++a+ el+k+a++++p+W +s+ e++n+de+l++f++++ +s+ea+r++g+v+m++++l ++++d++ qW+ ++a ka
Thhalv10018234m 256 EIANRATLELQKMATSDQPLWLRSVetgrEILNYDEYLKEFPQAHQassfpgrKSIEASRDVGIVFMDAHKLAQSFMDVG-QWKDMFAclisKA 348
578999************************************9999**********************************.************* PP
EEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEE CS
START 80 etlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvS 129
+t++vi++g ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvS
Thhalv10018234m 349 ATVDVIQQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPDKWAIVDVS 406
********************************************************99 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009957 | Biological Process | epidermal cell fate specification |
| GO:0010062 | Biological Process | negative regulation of trichoblast fate specification |
| GO:0005634 | Cellular Component | nucleus |
| GO:0008289 | Molecular Function | lipid binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 667 aa
Download sequence Send
to blast |
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASPGSTNP EEDFSGRRLA DDEDRTVEMS 60
SENSGPTRSR SEEDLEGTEE EDEEEEDTGA GNKGNKRKRK KYHRHTTDQI RHMEALFKET 120
PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKAELE KLREENKAMR 180
ESFSKANSCC PNCGGPDDLH LENSKLKAEL DKLRAALGRT PYPLQASCSE DQQHRLLGSH 240
DFYSGVFALE KSRIVEIANR ATLELQKMAT SDQPLWLRSV ETGREILNYD EYLKEFPQAH 300
QASSFPGRKS IEASRDVGIV FMDAHKLAQS FMDVGQWKDM FACLISKAAT VDVIQQGEGP 360
SRIDGAIQLM FGEMQLLTPV VPTREVYFVR SCRQLSPDKW AIVDVSPIFR SCVNTGLAFG 420
ARHWVATLQL QCERLVFFMA TNVPTKDSLG LHQWTKITTK TGQDMRVSSR KNLHDPGEPT 480
GVIVCASSSL WLPVSPTLLF DFFRDEARRH EWDTLSSGAH VQSIASLSKG QDRGNSVSIQ 540
TVKSREKSIW VLQDSCTNSY ESVVVYAPVD INTTQLVIAG HDPSNIQILP SGFSIIPDGV 600
ESRPLVITST REDRNTQGGS LLTLALQTLI NPSPAAKLNM ESVESVTNLV SVTLHNIKRS 660
LQIEDC*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF360294 | 0.0 | AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds. |
| GenBank | BT001956 | 0.0 | BT001956.1 Arabidopsis thaliana clone U09291 putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds. |
