PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WRKY

Protein Properties

Length: 288aa MW: 31550.4 Da PI: 6.3075

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017926m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.6	5.3e-28	162	222	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H+++ Thhalv10017926m 162 DDNHTWRKYGQKEILGSKFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 222 8**************************999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-27	153	222	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-25	158	223	IPR003657	WRKY domain
SMART	SM00774	9.1E-37	161	223	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	162	222	IPR003657	WRKY domain
PROSITE profile	PS50811	20.243	162	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEEVMSVIFQ GLNMVKELES SLPEKSPESL STSLDEITKT FGDANEQLKI VLEIRNTALN 60 QPKPVIASCS DQMLMQIEPD MMQEYWLRCG GSMLSQGTEA MTQRQLMALD GGGGRISTTT 120 ERSGGSGSGS STPRQRRRKD EGQEQTVLVA ALRTGNTDLP PDDNHTWRKY GQKEILGSKF 180 PRAYYRCTHQ KLYNCPAKKQ VQRLNDDPFT FRVTYRGSHT CHIYSTAPTA SAAAPTALIS 240 STAAATGHSV DYGPAVLDIA DAMFGSGGIG ANMDFIFPSN DPPQHDHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-21	162	221	9	68	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00304	DAP	Transfer from AT2G40740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017926m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411340.2	0.0	WRKY transcription factor 55 isoform X1
Swissprot	Q9SHB5	1e-162	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	V4MJJ2	0.0	V4MJJ2_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006411340.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3641	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	1e-124	WRKY DNA-binding protein 55

Link Out ? help Back to Top
Phytozome	Thhalv10017926m
Entrez Gene	18027558

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]