PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017903m
Common NameEUTSA_v10017903mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 200aa    MW: 22594.1 Da    PI: 6.36
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017903mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.3e-3971071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+k+Cv+apyf++eq +++fa++h++FGasn +k+l++lp e+r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+++
  Thhalv10017903m   7 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHQVFGASNASKVLSNLPMEDRYEAAITIYYEAQARLQDPIYGCVSHIFSLQQQVVNLQTQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lallkee 100
                      l+ lk++
  Thhalv10017903m 101 LEILKQQ 107
                      ***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1586108IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KVLSNLPMED  60
RYEAAITIYY EAQARLQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQAAQ SMMATDFPSI  120
ENPNYHRDTK PTHLQESQDL YRPHNNHHQD GSMETERYSD LNYIMTSYFE LEQHLNTFNP  180
HDHGGNDILS SSFGYISYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3531027105LOB family transfactor Ramosa2.1
5ly0_B7e-3531027105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017903m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738481e-152AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411501.11e-150LOB domain-containing protein 17
SwissprotQ9SLB61e-98LBD17_ARATH; LOB domain-containing protein 17
TrEMBLV4M9C71e-149V4M9C7_EUTSA; Uncharacterized protein
STRINGXP_006411501.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-90LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]