PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017871m

Common Name

EUTSA_v10017871mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 743aa MW: 85152.7 Da PI: 6.5063

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017871m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.4e-24	57	142	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA+ vGF +++++s++skr+g++++ + Cs+ g+++e++ + ++r+ +tgCka l++k+++d+kw+++++++eHnHe++p Thhalv10017871m 57 FYREYARLVGFGITIKASRRSKRSGKFIDVKIACSRFGTKRESNAA----INPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP 142 9*************************************998777....99*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-21	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-26	224	317	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.324	504	540	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.3E-7	504	537	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-7	515	542	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MDVEDVAIDL LTRSGNVDEF CEASTSGNVA RSIEQFATIG DLRNGLEFES KESAYYFYRE 60 YARLVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKRESN AAINPRSCPK TGCKAGLHMK 120 RKEDEKWVIY NFVKEHNHEI CPDDFYISLR GKNKPAGALA HQKKGLQVSL EEEDLKLMLE 180 HFTDMQEKQP GFFYAVDFDS EKRIRNVFWL DAKAKHDYCS FSDVVLFDTF YVRNKYRIPF 240 APFVGVSHHC QYVLLGCALI GEESESTYSW LFRTWLKAVG GQAPGVIITD QDKLLSDVVV 300 EIFPSARHCF CLWNVMSKIP DMLNPFVSQD DGFMESFRNC VHSSLTDEQF EKSWSNMIGE 360 FELSKNEWVH SLFKDRKKWV PHYFHGICLA GMCGPERSGS IASHFDKYMN SEATFKDFFE 420 LYMKFLQYRC DVEAKDDLES QSKQPTLRSS LAFEKQLSLI YTDAAFKKFQ AEVLGVVSCQ 480 LQKEREDGTT EIFCVEDFEK RQSFFVSLNK ELLDMYCSCH LFEYQGFLCK HAILVLQNSD 540 VSCIPPQYIL KRWSKNGENR EEKHEKCATI HDRMARFDDL CRRFVKFGEV ASLSDEAYMT 600 AIKLLEETLK NCVSVHSSPK SPSEPERLMT SGSIGLDNEG MLDCGSKFSR KKKIQKKRKA 660 YCGPEDATNR SEELRQETEQ VSSRAPTFEN CYIPQADMEA TELSSRAATL GIYYPAQQTI 720 QGFASVSSIQ DGYYGHPPTI QAM

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MDVEDVAIDL LTRSGNVDEF CEASTSGNVA RSIEQFATIG DLRNGLEFES KESAYYFYRE  60
YARLVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKRESN AAINPRSCPK TGCKAGLHMK  120
RKEDEKWVIY NFVKEHNHEI CPDDFYISLR GKNKPAGALA HQKKGLQVSL EEEDLKLMLE  180
HFTDMQEKQP GFFYAVDFDS EKRIRNVFWL DAKAKHDYCS FSDVVLFDTF YVRNKYRIPF  240
APFVGVSHHC QYVLLGCALI GEESESTYSW LFRTWLKAVG GQAPGVIITD QDKLLSDVVV  300
EIFPSARHCF CLWNVMSKIP DMLNPFVSQD DGFMESFRNC VHSSLTDEQF EKSWSNMIGE  360
FELSKNEWVH SLFKDRKKWV PHYFHGICLA GMCGPERSGS IASHFDKYMN SEATFKDFFE  420
LYMKFLQYRC DVEAKDDLES QSKQPTLRSS LAFEKQLSLI YTDAAFKKFQ AEVLGVVSCQ  480
LQKEREDGTT EIFCVEDFEK RQSFFVSLNK ELLDMYCSCH LFEYQGFLCK HAILVLQNSD  540
VSCIPPQYIL KRWSKNGENR EEKHEKCATI HDRMARFDDL CRRFVKFGEV ASLSDEAYMT  600
AIKLLEETLK NCVSVHSSPK SPSEPERLMT SGSIGLDNEG MLDCGSKFSR KKKIQKKRKA  660
YCGPEDATNR SEELRQETEQ VSSRAPTFEN CYIPQADMEA TELSSRAATL GIYYPAQQTI  720
QGFASVSSIQ DGYYGHPPTI QAM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017871m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024004256.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	V4M6A2	0.0	V4M6A2_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006410356.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Thhalv10017871m
Entrez Gene	18027874

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]