PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017830m
Common NameEUTSA_v10017830mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 442aa    MW: 49892.7 Da    PI: 4.946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017830mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11232275654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  Thhalv10017830m 232 FTTERERRCHLNERYEALKMLIPSP-----SKGDRASILQDGIDYINEL 275
                      578*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-11224284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-11224280No hitNo description
SuperFamilySSF474592.62E-13226292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.024226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9230275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-9232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MYQESSCFDH NPTVESIVDN NGDFCESPAM ETAFPVSHQF QQPLLVAGSS TNSFNDDLKL  60
PTMEEFSVFP SVVSFPNSET HNQISNNNDN NNHLIHQMIH ESNWAVSGDN SGFFMNTSDP  120
NTTTTPIPDL LSLLHLPRCS VSLPSSNLSD IMSGSCFTYD PLFHLNLPPQ PPLMPVNDYS  180
GFLLGTDLTN TSQRDQVNVG DENDNAGFDS GIIEFSKEIR RKRRGKQKNK PFTTERERRC  240
HLNERYEALK MLIPSPSKGD RASILQDGID YINELRRRVS ELKYLVERKR CGGRRKNNNA  300
VDNNNNLDDR INEDDDDDEN MEKKPESDVI DQCSSNNSLR CSWLQMKSKV TEVDVRIVDD  360
EVTIKVVQKM KINCLLVVSK VLDQLHLDLH HVAGGQIGEH YSFLLNTKIY EGSTIYASAI  420
ANRVIEVVDK HYMAALPINN Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017830m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410252.10.0transcription factor bHLH91
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLV4LMD20.0V4LMD2_EUTSA; Uncharacterized protein
STRINGXP_006410252.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]