PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

ERF

Protein Properties

Length: 234aa MW: 26585.3 Da PI: 6.1321

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017658m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.8	3.1e-19	67	125	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse....ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p++ n ++kr +lg+f+ta eAa a+++a+ +++g Thhalv10017658m 67 CRFRGVRQRV-WGKWVAEIREPVShrdvNSsRSKRLWLGTFDTAAEAALAYDRAASAMYG 125 689***99.******888654444666********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.22E-28	67	135	No hit	No description
Pfam	PF00847	2.6E-14	67	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.194	68	133	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.1E-28	68	134	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-19	68	134	IPR016177	DNA-binding domain
SMART	SM00380	2.7E-32	68	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.5E-10	69	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.5E-10	99	115	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0034605	Biological Process	cellular response to heat
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEKEDNGSKQ SSSSRRRRRA VEPVEATLKR WVKDEDEEGL EKVRRVQAKG SRKGCMRGKG 60 GPENPVCRFR GVRQRVWGKW VAEIREPVSH RDVNSSRSKR LWLGTFDTAA EAALAYDRAA 120 SAMYGRYARL NFPEDLGNGP GREDMKKNDE TESSTSYYGN AMIGMKDQKN DNGIEFGQDK 180 TENLDPLVYE NSAVKSEGDY SFDQFELDNG LLYNESSYYQ GAGFDSYLEY SRF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	68	141	14	80	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:21069430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00298	DAP	Transfer from AT2G38340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017658m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411048.1	1e-172	dehydration-responsive element-binding protein 2E
Swissprot	O80917	6e-94	DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBL	V4NZW4	1e-171	V4NZW4_EUTSA; Uncharacterized protein
STRING	XP_006411048.1	1e-172	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14249	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38340.1	4e-89	ERF family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017658m
Entrez Gene	18027171

Publications ? help Back to Top
Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]