PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017299m
Common NameEUTSA_v10017299mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 181aa    MW: 20359.1 Da    PI: 5.5517
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017299mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.4e-3871071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C +Ck+lrrkC+++Cv+apyf++e+ +++fa++h++FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a+
  Thhalv10017299m   7 PCGGCKFLRRKCVEGCVFAPYFCNEEgSSNFAAIHRVFGASNFSKLISHLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQ 100
                      7***********************9979****************************************************************** PP

           DUF260  94 lallkee 100
                      ++ll+ee
  Thhalv10017299m 101 VVLLREE 107
                      *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8946108IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-357105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCN EEGSSNFAAI HRVFGASNFS KLISHLPVHD  60
RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEACR KFPQENCMEE  120
EKVLAQDMPQ DLHSWFHQLV SNSNLNQMSD IASTSMDKNE SFCSSNESLY YQEVMFPWPV  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3531017104LOB family transfactor Ramosa2.1
5ly0_B1e-3531017104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017299m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-145AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410263.11e-133LOB domain-containing protein 14
SwissprotQ9SJW51e-102LBD14_ARATH; LOB domain-containing protein 14
TrEMBLV4NXR61e-132V4NXR6_EUTSA; Uncharacterized protein
STRINGXP_006410263.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.15e-87LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]