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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10017196m |
| Common Name | EUTSA_v10017196mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
BBR-BPC |
| Protein Properties |
Length: 232aa MW: 25523.2 Da PI: 10.5697 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10017196m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 263.4 | 1.3e-80 | 34 | 231 | 99 | 301 |
GAGA_bind 99 vqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekk 192
+ ++ t+ id +q +q ++s v + + l +p+++++++++++k+k+++ ++++++++k +kkk++ +k+ kk++++ +++k+ekk
Thhalv10017196m 34 YFPVPRTTGIDLSQL---SQENPSEVVMVPQARLFPPPTRDSRSDMETVKHKSSKLSPSEALKPKPQKKKRSASKNPKKTAPSV--PETKREKK 122
445677777777776...555666666899999***********************************9996666555555444..79****** PP
GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286
+ d++++ s+D s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+g R+agrKmS+ga+ klL +La+eGydl pvDL+
Thhalv10017196m 123 NPDINIDISSFDVSGVPPPVCSCTGVPRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGVRLAGRKMSNGAYVKLLMRLAGEGYDLTLPVDLR 216
********************************************************************************************** PP
GAGA_bind 287 dhWAkHGtnkfvtir 301
+hWA+HGtnkfvti+
Thhalv10017196m 217 NHWARHGTNKFVTIK 231
**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MNNSYPSRNH IQSATSASKD TGLPTSNAHW FHSYFPVPRT TGIDLSQLSQ ENPSEVVMVP 60
QARLFPPPTR DSRSDMETVK HKSSKLSPSE ALKPKPQKKK RSASKNPKKT APSVPETKRE 120
KKNPDINIDI SSFDVSGVPP PVCSCTGVPR VCYKWGMGGW QSSCCTISIS TYPLPMSTTR 180
PGVRLAGRKM SNGAYVKLLM RLAGEGYDLT LPVDLRNHWA RHGTNKFVTI K*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
