 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10017167m |
| Common Name | EUTSA_v10017167mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
bHLH |
| Protein Properties |
Length: 244aa MW: 27341.9 Da PI: 5.1846 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10017167m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 53.8 | 3.4e-17 | 63 | 115 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++ +hn+ Er RR++iN f+ Lr++lP + +skKls ++++ +A +YI +Lq
Thhalv10017167m 63 KKLNHNASERDRRKKINAMFSSLRDCLPAtD---QSKKLSVSATVSQALKYIPELQ 115
6789*************************77...*******************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0010106 | Biological Process | cellular response to iron ion starvation |
| GO:0055072 | Biological Process | iron ion homeostasis |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MCALVPPLFP NFGWPCGDHG LYENDDVSNT FLDFPLPEFQ VAHRNVSLER NTILEIENPV 60
AMKKLNHNAS ERDRRKKINA MFSSLRDCLP ATDQSKKLSV SATVSQALKY IPELQEQVKK 120
LVKKKEELSF QISGQRDLVY TDQNGEPKKG VTSYASTVSA TKLGETEVMV QISSLQTEKC 180
SFGNVLNGVE EDGLVLLDAS SSRSQGERLF YTLHLQMDNC NLNSEELSDR LSYLYENFGK 240
SFT*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Plays a role in metal homeostasis. Confers tolerance to high zinc (Zn) and nickel (Ni). {ECO:0000269|PubMed:18088336}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by heat treatment, high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17516080, ECO:0000269|PubMed:18088336}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Maurer F,Naranjo Arcos MA,Bauer P
Responses of a triple mutant defective in three iron deficiency-induced Basic Helix-Loop-Helix genes of the subgroup Ib(2) to iron deficiency and salicylic acid.
PLoS ONE, 2014. 9(6): p. e99234
[PMID:24919188] - Martínez-Trujillo M, et al.
Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
Plant Mol. Biol., 2014. 86(1-2): p. 35-50
[PMID:24928490] - Van Dingenen J, et al.
Strobilurins as growth-promoting compounds: how Stroby regulates Arabidopsis leaf growth.
Plant Cell Environ., 2017. 40(9): p. 1748-1760
[PMID:28444690] - Wang C,Yao X,Yu D,Liang G
Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana.
Planta, 2017. 246(3): p. 421-431
[PMID:28451750] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
Plant J., 2018. 94(1): p. 157-168
[PMID:29396986] - Kurt F,Filiz E
Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
Biometals, 2018. 31(4): p. 489-504
[PMID:29546482]
|
