PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017152m | ||||||||
Common Name | EUTSA_v10017152mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 28197 Da PI: 9.6612 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.3 | 8.9e-51 | 14 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+di+k++PwdLp ++e yfFs+r+ ky++g+r+nr+t sgyWkatg dk++ Thhalv10017152m 14 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPEIDICKADPWDLPGD---CDSEKYFFSTREAKYPNGNRSNRSTGSGYWKATGIDKQIGG 103 79****************************.99***************44...46799**********************************87 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++lvg+kktLvfykg+ p+g++t+Wv+heyrl Thhalv10017152m 104 --KKLVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 135 ..899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-59 | 9 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.496 | 14 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-27 | 15 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEKHSSIKNR GLRLPPGFRF HPTDEELVVQ YLRRKVTGLP LPASVIPEID ICKADPWDLP 60 GDCDSEKYFF STREAKYPNG NRSNRSTGSG YWKATGIDKQ IGGKKLVGMK KTLVFYKGKP 120 PNGTRTNWVL HEYRLVDSYG ESKNWVLCRV FLKKRSNNSN KRKEDERERE SEDKKSTCPI 180 FYDFMRKDRK RRSCCDLNLT PTCCSCSSSS SSASSSVCSS ALTQTSSNDS DNHEVISCRK 240 NKFCLFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-52 | 12 | 156 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 12 | 156 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 12 | 156 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 12 | 156 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 12 | 156 | 18 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-52 | 12 | 156 | 15 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 12 | 156 | 15 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017152m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975668 | 1e-145 | KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410492.1 | 0.0 | NAC domain-containing protein 41 | ||||
Swissprot | O22798 | 1e-118 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | V4LN07 | 0.0 | V4LN07_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410492.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-111 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017152m |
Entrez Gene | 18027586 |
Publications ? help Back to Top | |||
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