PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017126m
Common NameEUTSA_v10017126mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 257aa    MW: 28605.9 Da    PI: 6.7621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017126mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-1369115354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h  +E+rRRdriNs ++ Lr+l+P +      Kl+Ka+ L  ++e +k+L
  Thhalv10017126m  69 RSHRLAEKRRRDRINSHLSALRKLVPDS-----DKLDKAALLATVIEQVKEL 115
                      68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.09766115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1069115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1369124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-1169118No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1470123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.423156232IPR002912ACT domain
Gene3DG3DSA:3.30.70.2602.8E-4158222No hitNo description
CDDcd048739.65E-5158226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENSYDSAAK WSDSDNSPYS LVSWSLQTDS SDSDFSRFNL GFSSSSTSSG NFPPDEFVGG  60
IEKAESLSRS HRLAEKRRRD RINSHLSALR KLVPDSDKLD KAALLATVIE QVKELKQKAK  120
ESQIFQDLPT EADEVTVQSE TISNDFESDT NRVIFKASFC CEDQPEAISE IVRVLTKFQL  180
ETIQAEIICL GGRTRINFIL KDSDCKETTK MAASAKALKQ SLCAALNRIT SSSSSTSSVC  240
RIRSKRQRWF LSSHYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017126m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411274.10.0transcription factor bHLH51
SwissprotQ9XEF01e-146BH051_ARATH; Transcription factor bHLH51
TrEMBLV4MC330.0V4MC33_EUTSA; Uncharacterized protein
STRINGXP_006411274.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]